Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C03
         (1257 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.79 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   3.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 730 KXEPKDGKKTGKTXQETFNXTRPPS 656
           K E KDG   GKT  E  +   PPS
Sbjct: 215 KVERKDGNADGKTLIEALDAILPPS 239


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 1154 TPXXPPPPPPXP 1189
            TP  P PPPP P
Sbjct: 337  TPPKPAPPPPPP 348


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 257 WQRKXLWGIYXLKVFSRGGXWGXKPVW 337
           WQ+    G Y    +S G  +  +P+W
Sbjct: 287 WQKPFYPGYYPTMTYSNGLPFPQRPIW 313


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 257 WQRKXLWGIYXLKVFSRGGXWGXKPVW 337
           WQ+    G Y    +S G  +  +P+W
Sbjct: 287 WQKPFYPGYYPTMTYSNGLPFPQRPIW 313


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 1166 PPPPPPXP 1189
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 1130 IXRXNWW*TPXXPPPPPP 1183
            + R  W      PPPPPP
Sbjct: 1345 LERTAWRQQQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,676
Number of Sequences: 438
Number of extensions: 6859
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42982554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)