Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_C02
(1365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 46 2e-05
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 42 3e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 37 0.007
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 34 0.040
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.052
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 0.24
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 3.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 3.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 6.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 6.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 8.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/34 (52%), Positives = 18/34 (52%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPPPXXV 622
PPP P PPPPP PPPPPPPP V
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXP----PPPPPPPXXV 622
PPPPP P P P P PPPPPPP V
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV 770
Score = 37.1 bits (82), Expect = 0.006
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 740 PFXXXXPPPXPXXPXXPPPPXXXXXXXXXXPPPPPP 633
P PPP P PPPP PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.9 bits (64), Expect = 0.85
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 699 PPPPPPXXFXXXXXXPPPPPPPPXXV 622
PPPPPP P P PPP +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -3
Query: 715 PXPXXPXXPPPPXFXXXXXXPXPPPPPPXXG 623
P P P PP P PPPPP G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXPXXPPPPXFXXXXXXPXPPPPP 635
PPP PPP PPPP PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP----------PPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 41.5 bits (93), Expect = 3e-04
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -1
Query: 714 PPXXXPPPPPPXXFXXXXXXPPPPPP 637
PP PPPPPP F PPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 37.9 bits (84), Expect = 0.003
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 711 PXXXPPPPPPXXFXXXXXXPPPPPPP 634
P PPPPPP PPPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 30.7 bits (66), Expect = 0.49
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPP 640
PPPPP PP PP PPPPP
Sbjct: 12 PPPPPGFEPPSQPP---------PPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 36.7 bits (81), Expect = 0.007
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPP 634
PPPPP PPPP PPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPP 634
P PPP PPPP P PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 32.3 bits (70), Expect = 0.16
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 720 PPPPXXXPPPPPPXXFXXXXXXPPPPPPPP 631
PPPP PPPP PP PPPP
Sbjct: 1707 PPPPPMSVPPPPSA--PPMPAGPPSAPPPP 1734
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 720 PPPPXXXPPPPPPXXFXXXXXXPPPPPPPP 631
PP PPPPP PP P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXPXXPPPPXFXXXXXXPXPPP 641
PPP PP P P PPP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 34.3 bits (75), Expect = 0.040
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 720 PPPPXXXPPPPPPXXFXXXXXXPPPPPPPPXXV 622
PPP P P PPPPPPPP V
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAV 199
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 721 PPPXPXXPXXPPPPXFXXXXXXPXPPPPPP 632
PPP P P P PPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 23.8 bits (49), Expect(2) = 2.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 654 PPPPPPP 634
PPPPPPP
Sbjct: 238 PPPPPPP 244
Score = 22.6 bits (46), Expect(2) = 2.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 711 PXXXPPPPPP 682
P PPPPPP
Sbjct: 234 PLPAPPPPPP 243
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.052
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPPP 631
PPPPP PP PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Frame = -1
Query: 720 PPPPXXXPPPPPPXXFXXXXXXPPP---------PPPPPXXV 622
PP PPPPPP PPP PP PP +
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 720 PPPPXXXPPPPPPXXFXXXXXXPPPPPPPP 631
PP P P PP PPP PPP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPPP 631
PP P PP PP PP PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPPP 631
PP PP PP P PP P PP
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -2
Query: 740 PFXXXXPPPXPXXPXXPPPPXXXXXXXXXXPPPPPPXXGXFFXXP 606
P PP P P PP PP PPP G P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Frame = -1
Query: 699 PPPPPPXXFXXXXXXPPPP-----PPPP 631
PPPPPP P PP PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPP 643
P PP PPPPP PPP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = -2
Query: 722 PPPXPXXPXXPPPPXXXXXXXXXXPPPPPPXXGXFFXXPL 603
PPP PP PPPPPP PL
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.5 bits (58), Expect(2) = 0.24
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 654 PPPPPPPPXXV 622
PPPPPPPP V
Sbjct: 945 PPPPPPPPPLV 955
Score = 22.6 bits (46), Expect(2) = 0.24
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 711 PXXXPPPPPP 682
P PPPPPP
Sbjct: 942 PAFPPPPPPP 951
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGGG 724
GG GG G GGG GG GG GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGGG 724
GG GG G GG GGG GGG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGG 721
G GG GG GGG GG G GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGGG 724
GGG GG G GG G GG GG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGG 721
GG GGG G GGG GG G GG
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGG 721
GG GG GG GG GGG GGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGG 721
GG GGG G GGG GG G GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGG 721
GG GG GG GG GGG GGG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGGG 724
G GG GGG G GGG GGG G
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 632 GGGGGGGGXXXXXXKXXGGGGGGXXXGGGGG 724
G GG GGG G GGG GGG G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPPP 631
P PPP PP P P PPP PP
Sbjct: 1190 PVPPPSEAPPVPKPSV--GVPPVPPPSTAPP 1218
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPPPP 634
PP PP PP P PP PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 638 GGGGGGXXXXXXKXXGGGGGGXXXGGGGG 724
GG GG GG GGG G GGG
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 281 KPXGKKXXKXXGXGPXGXGKKGGXKXXEXGXKXG 382
K G K K GP G G +GG + G + G
Sbjct: 120 KTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGG 153
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -1
Query: 717 PPPXXXPPPPPPXXFXXXXXXPPPPPPPPXXV 622
P P P PPPPPPPP V
Sbjct: 1074 PSNISKPSAPVANNVSKPSAVPPPPPPPPAEV 1105
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 720 PPPPXXXPPPPPPXXFXXXXXXPPP 646
PPPP PPPPP F P P
Sbjct: 306 PPPP---PPPPPSNDFWKDSNEPAP 327
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 654 PPPPPPPPXXVXFF 613
PPPPPPPP F+
Sbjct: 306 PPPPPPPPPSNDFW 319
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = -3
Query: 760 PPPXXXXXXXXXXPPPXPXXP-XXPPPPXFXXXXXXPXPPPP 638
PPP PPP P PPP PPPP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPP 640
P P P PP P PPPPP
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPP 748
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -1
Query: 723 PPPPPXXXPPPPPPXXFXXXXXXPPPPP 640
PPPPP P PP P PP
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPP 1910
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 8.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 654 PPPPPPPP 631
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.302 0.137 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,469
Number of Sequences: 5004
Number of extensions: 39649
Number of successful extensions: 469
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 753140462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)
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