Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C01
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical...    29   3.2  
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    29   5.7  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical
           protein Y53F4B.28 protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +1

Query: 43  DLSCPQASYISTRFVNIIPTT*FLFLDGHYSYC*AFLLYNKTNRYFKTRLLTVIEFKMCY 222
           D S P    ++T F N +    F       S+   + + ++T    + R +T+       
Sbjct: 195 DTSIPNGRALATDFENKVRA--FFASISDLSHHIKYSVLSRTRELEEQRAITITSLPFLG 252

Query: 223 LNIIFLTCALLVTSI 267
           L I+ LTC +LVT +
Sbjct: 253 LTIVVLTCFMLVTLV 267


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 329 LKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 225
           +  G+  +S N   + ++FC+I  +  +H+ NI+F
Sbjct: 37  ISHGYFDVSKNTQITSDIFCSISFSFTSHLSNILF 71


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
            C05D12.2 protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 415  WICDCRPANLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPV 543
            W   C P   Y  G   C P F    CE+   LVLP+N  I V
Sbjct: 981  WDRICHPPATYSFGICSCPPGFYGDFCEI--MLVLPKNGSILV 1021


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,402,439
Number of Sequences: 27780
Number of extensions: 383908
Number of successful extensions: 1078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)