Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B24
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   1.0  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   4.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.2  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 307 VAFXSSPCPWLKVLVALGG-TARRPVLGGSGSESKM 203
           VA   S  P LKVL+++GG  A   +L G  + SK+
Sbjct: 86  VANLKSVNPDLKVLISIGGWNAGNAILNGIVASSKL 121


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 409 KPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
           +PT  SE+P  S   + P+  + P  G  S
Sbjct: 410 EPTQASEQPTESSTTQKPQTTKTPESGNES 439


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 254 TKRNEHFQPRTRR*AESDQRH 316
           T+RN +++PRT R     ++H
Sbjct: 227 TRRNPYYRPRTSRTEPPRRKH 247


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 265  VALGGTARRPVLGGSGSESKMLVWPPXGGAE 173
            V L GTA  P  G SG  S     PP  G E
Sbjct: 1104 VPLKGTAVPPPSGSSGPGSTGSKSPPVAGFE 1134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,964
Number of Sequences: 336
Number of extensions: 3462
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)