Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B24
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.12 
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    27   3.5  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   3.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 19/66 (28%), Positives = 23/66 (34%)
 Frame = +3

Query: 150 SSSIKQGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEXKATNGTSVAT 329
           S+S     S PP G  T        P  T   + PP   ST S G       +  TS  T
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTT 341

Query: 330 NGQSTP 347
           +    P
Sbjct: 342 STSIPP 347



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 19/66 (28%), Positives = 23/66 (34%)
 Frame = +3

Query: 150 SSSIKQGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEXKATNGTSVAT 329
           S+S     S PP G  T        P  T   + PP   ST S G       +  TS  T
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTT 395

Query: 330 NGQSTP 347
           +    P
Sbjct: 396 STSIPP 401


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 517 PHPLAVSLYNQIFDFHLTHIMSQICIEAKFFLRY 618
           P+  ++S+YNQI D +   I  +      +FLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 447 RXRSPQARQGPPRRVLLGLVVNRTAPVG--CESVQSNL 554
           + ++PQ +  PP   L  + VN+  PVG  C+  + NL
Sbjct: 58  KKKTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAEDNL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,124
Number of Sequences: 5004
Number of extensions: 51856
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)