Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_B24
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 31 1.6
09_02_0199 + 5710554-5710640,5710863-5710964 29 3.7
02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314 29 3.7
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 29 4.9
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 29 4.9
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 29 4.9
05_05_0089 - 22305727-22306115,22306206-22306311,22306386-223067... 29 6.5
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318... 28 8.6
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 222 EPPRTGRRAVPPS--ATSTFSHGQGDEXKATNGTSVATNGQST 344
+ PR+G ++ S A ST +HGQ + G + +N QST
Sbjct: 410 QSPRSGGTSLNSSGFAASTVNHGQSSVVRTQGGNGIPSNNQST 452
>09_02_0199 + 5710554-5710640,5710863-5710964
Length = 62
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 459 GFGPWAAPGPLGLDCRLWERAL 394
GFGPWA+P GL R W R +
Sbjct: 11 GFGPWASPA--GLQLRAWYRQI 30
>02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314
Length = 261
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 537 THSQRVRFGLPQARGEPAGGDPDALGGFGPWAAPGPLGLDC 415
T S++ R QA GEP DPDA G AP + C
Sbjct: 4 TESKKRRSKSNQAAGEPTALDPDAASVVGADGAPDATAVAC 44
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 209 RFRTGATEDRAPCRSTKRN---EHFQPRTRR*AESDQRHFSSDQRSVHS*GEPGATDPAG 379
R RTG E R T+R E +P R A + +R +++QR + + G +DPAG
Sbjct: 573 RRRTGGVERRRREPVTRRRGGKERRRPSWRALAANRRRGEAANQRRGEAATQRGGSDPAG 632
Query: 380 G 382
G
Sbjct: 633 G 633
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 217 SESKMLVWPPXGGAEXPCLIDEL 149
+ +M +WP GG PC DEL
Sbjct: 315 TRGRMTMWPELGGRSLPCTSDEL 337
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 534 HSQRVRFGLPQAR-GEPAGGDPDALGGFGPWAAPGP 430
H ++ P A G P GG P A G F P PGP
Sbjct: 245 HHSMFKYVRPGATLGAPLGGAPTATGQFRPPGPPGP 280
>05_05_0089 -
22305727-22306115,22306206-22306311,22306386-22306730,
22306847-22307257
Length = 416
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 421 QSERPRSSPGXEAPKRVRVPPGGFSSG 501
+S P S PG PK V PP G S G
Sbjct: 339 RSNGPPSPPGCSRPKAVLPPPAGASGG 365
>06_01_0450 +
3185342-3185645,3185761-3185837,3185948-3186028,
3186508-3186636,3186765-3186851,3186962-3187015,
3187432-3187522,3187615-3187685,3187770-3187839,
3187988-3188040,3188132-3188225,3188569-3188666,
3190126-3190209
Length = 430
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 174 SAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEXKATNGTSVATNGQS 341
+AP GGH + +P R ++ + T+T S G G + G + A G S
Sbjct: 19 AAPATGGHVTVTARKPRGRRLSGKST--TTTTTASLGCGSKPNNIRGATAAAGGGS 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,171,985
Number of Sequences: 37544
Number of extensions: 430095
Number of successful extensions: 1451
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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