Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_B24
(880 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC060853-1|AAH60853.1| 190|Homo sapiens hematological and neuro... 33 1.8
BC014438-1|AAH14438.1| 190|Homo sapiens hematological and neuro... 33 1.8
AY598330-1|AAT06741.1| 190|Homo sapiens L11 protein. 33 1.8
AY323979-1|AAP83792.1| 174|Homo sapiens hematological and neuro... 33 1.8
AY323978-1|AAP83791.1| 174|Homo sapiens hematological and neuro... 33 1.8
AY323831-1|AAP72616.1| 190|Homo sapiens hematological and neuro... 33 1.8
AL031710-2|CAM26365.1| 190|Homo sapiens chromosome 16 open read... 33 1.8
AL031009-2|CAA19770.2| 190|Homo sapiens chromosome 16 open read... 33 1.8
AK023154-1|BAB14434.1| 190|Homo sapiens protein ( Homo sapiens ... 33 1.8
AE006639-3|AAK61289.1| 190|Homo sapiens HN1 like protein. 33 1.8
J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein. 32 3.2
BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein. 32 3.2
AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha ... 32 3.2
AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-... 32 3.2
AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-... 32 3.2
AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-... 32 3.2
AB208844-1|BAD92081.1| 1017|Homo sapiens alpha 1 type XI collage... 32 3.2
AY898961-1|AAX84028.1| 540|Homo sapiens type XXIII collagen pro... 31 5.5
AY158895-1|AAO18361.1| 540|Homo sapiens alpha 1 type XXIII coll... 31 5.5
AB065600-1|BAC05828.1| 727|Homo sapiens seven transmembrane hel... 31 5.5
AF317634-1|AAL26903.1| 616|Homo sapiens HRD1 protein. 30 9.6
AB085847-1|BAC24801.1| 616|Homo sapiens HRD1 protein. 30 9.6
AB058713-1|BAB47439.1| 579|Homo sapiens KIAA1810 protein protein. 30 9.6
>BC060853-1|AAH60853.1| 190|Homo sapiens hematological and
neurological expressed 1-like protein.
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>BC014438-1|AAH14438.1| 190|Homo sapiens hematological and
neurological expressed 1-like protein.
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>AY598330-1|AAT06741.1| 190|Homo sapiens L11 protein.
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>AY323979-1|AAP83792.1| 174|Homo sapiens hematological and
neurological expressed 1-like protein B protein.
Length = 174
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 140 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 170
>AY323978-1|AAP83791.1| 174|Homo sapiens hematological and
neurological expressed 1-like protein B protein.
Length = 174
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 140 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 170
>AY323831-1|AAP72616.1| 190|Homo sapiens hematological and
neurological expressed gene 1-like protein-like protein
protein.
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>AL031710-2|CAM26365.1| 190|Homo sapiens chromosome 16 open reading
frame 34 protein.
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>AL031009-2|CAA19770.2| 190|Homo sapiens chromosome 16 open reading
frame 34 protein.
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>AK023154-1|BAB14434.1| 190|Homo sapiens protein ( Homo sapiens
cDNA FLJ13092 fis, clone NT2RP3002147. ).
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>AE006639-3|AAK61289.1| 190|Homo sapiens HN1 like protein.
Length = 190
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 406 PKPTVQSERPRSSPGXEAPKRVRVPPGGFSS 498
P PTV S PR P + +V PPGG SS
Sbjct: 156 PMPTVDSHEPRLGPRPRSHNKVLNPPGGKSS 186
>J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein.
Length = 1806
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 513 GLPQARGEP-AGGDPDALGGFGPWAAPGPLG 424
G P RG P A G P GG GP PGP+G
Sbjct: 1027 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1057
>BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein.
Length = 1690
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 513 GLPQARGEP-AGGDPDALGGFGPWAAPGPLG 424
G P RG P A G P GG GP PGP+G
Sbjct: 911 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 941
>AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha 1
protein.
Length = 1806
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 513 GLPQARGEP-AGGDPDALGGFGPWAAPGPLG 424
G P RG P A G P GG GP PGP+G
Sbjct: 1027 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1057
>AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-1
protein.
Length = 1767
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 513 GLPQARGEP-AGGDPDALGGFGPWAAPGPLG 424
G P RG P A G P GG GP PGP+G
Sbjct: 988 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1018
>AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-a
isoform B protein.
Length = 1818
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 513 GLPQARGEP-AGGDPDALGGFGPWAAPGPLG 424
G P RG P A G P GG GP PGP+G
Sbjct: 1039 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1069
>AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-1
isoform A protein.
Length = 1806
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 513 GLPQARGEP-AGGDPDALGGFGPWAAPGPLG 424
G P RG P A G P GG GP PGP+G
Sbjct: 1027 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1057
>AB208844-1|BAD92081.1| 1017|Homo sapiens alpha 1 type XI collagen
isoform C preproprotein variant protein.
Length = 1017
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 513 GLPQARGEP-AGGDPDALGGFGPWAAPGPLG 424
G P RG P A G P GG GP PGP+G
Sbjct: 238 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 268
>AY898961-1|AAX84028.1| 540|Homo sapiens type XXIII collagen
protein.
Length = 540
Score = 31.1 bits (67), Expect = 5.5
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 513 GLPQARGEPAG-GDPDALGGFGPWAAPGPLGLD 418
G P RG+P GDP G G PGPLGLD
Sbjct: 121 GPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLD 153
>AY158895-1|AAO18361.1| 540|Homo sapiens alpha 1 type XXIII
collagen protein.
Length = 540
Score = 31.1 bits (67), Expect = 5.5
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 513 GLPQARGEPAG-GDPDALGGFGPWAAPGPLGLD 418
G P RG+P GDP G G PGPLGLD
Sbjct: 121 GPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLD 153
>AB065600-1|BAC05828.1| 727|Homo sapiens seven transmembrane helix
receptor protein.
Length = 727
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 295 SSPCPWLKVLVALG--GTARRPVLGGSGSESKMLVWPPXGGA 176
S CPW +L+ G P+L + + + MLV PP G A
Sbjct: 244 SERCPWASLLLPCSACGAVPSPLLSSASARNAMLVVPPGGRA 285
>AF317634-1|AAL26903.1| 616|Homo sapiens HRD1 protein.
Length = 616
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 207 FDSEPEPPRTGRRAVPPSATSTFSHGQGDEXKATNGTSVATNGQST 344
F P PP +G PPS ++ S G GTS AT +T
Sbjct: 391 FPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTS-ATAASAT 435
>AB085847-1|BAC24801.1| 616|Homo sapiens HRD1 protein.
Length = 616
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 207 FDSEPEPPRTGRRAVPPSATSTFSHGQGDEXKATNGTSVATNGQST 344
F P PP +G PPS ++ S G GTS AT +T
Sbjct: 391 FPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTS-ATAASAT 435
>AB058713-1|BAB47439.1| 579|Homo sapiens KIAA1810 protein protein.
Length = 579
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 207 FDSEPEPPRTGRRAVPPSATSTFSHGQGDEXKATNGTSVATNGQST 344
F P PP +G PPS ++ S G GTS AT +T
Sbjct: 354 FPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTS-ATAASAT 398
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,284,917
Number of Sequences: 237096
Number of extensions: 2378088
Number of successful extensions: 11967
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11940
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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