Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B24
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    31   1.4  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    31   1.4  
AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen prot...    31   1.4  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    28   7.7  
AF016671-3|AAB66109.2|  205|Caenorhabditis elegans Collagen prot...    28   7.7  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   7.7  
AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 123  TIQRWPQ*RSSSIKQGCSAPPXGGHTNIFDSEPEPPR-TGRRAVPPSATSTFSHGQGDEX 299
            T++R  +     IK     PP  G      SEP+    +G    PPS+ ST +    D  
Sbjct: 1717 TVERLNKFMPELIKDTIPNPPRPGQQQSEASEPKKEHASGLEPPPPSSNSTAATSTSDPS 1776

Query: 300  KATNGTSVAT 329
             AT  +S++T
Sbjct: 1777 IATAQSSIST 1786


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 123  TIQRWPQ*RSSSIKQGCSAPPXGGHTNIFDSEPEPPR-TGRRAVPPSATSTFSHGQGDEX 299
            T++R  +     IK     PP  G      SEP+    +G    PPS+ ST +    D  
Sbjct: 1717 TVERLNKFMPELIKDTIPNPPRPGQQQSEASEPKKEHASGLEPPPPSSNSTAATSTSDPS 1776

Query: 300  KATNGTSVAT 329
             AT  +S++T
Sbjct: 1777 IATAQSSIST 1786


>AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen protein
           105 protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 519 RFGLPQARGEP----AGGDPDALGGFGPWAAPGPLG 424
           R G P   GEP    A GDP  LG  GP   PGP G
Sbjct: 205 RAGAPGPPGEPGPPGAHGDPGDLGEEGPPGLPGPKG 240


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 180 PPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEXKATNGTSVATN 332
           PP  G+   F + P  P +    VPP A S F    G +   T+ T+ ++N
Sbjct: 326 PPSAGY--FFQAPPPAPASSSSTVPP-AVSPFGVPLGAQPSTTSSTTYSSN 373


>Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical
           protein T11F9.9 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 513 GLPQARGEPAGGDPDALGGFGPWAAPGPLG 424
           G P   G+ A  +P   G  GP  APGP G
Sbjct: 199 GAPGQPGQDAPSEPITPGAPGPQGAPGPQG 228


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 526 LAVSLYNQIFD---FHLTHIMSQICIEAKFFLR 615
           LA+SL N  FD   + LT  + QIC    FFLR
Sbjct: 66  LALSLLNLFFDIFYYRLTLFVPQICESFSFFLR 98


>AF016671-3|AAB66109.2|  205|Caenorhabditis elegans Collagen protein
           72 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = -2

Query: 513 GLPQARGEPAGGDPDALGGF----GPWAAPG 433
           G P  RGEP G   D   GF    GP  APG
Sbjct: 152 GTPGGRGEPGGPGTDGFPGFAGNPGPDGAPG 182


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 168 GCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQG 290
           G   PP G       S P PPR G   +PP    +F  G+G
Sbjct: 754 GAPPPPFGRGAGPMSSFPPPPRGGMHHMPP--PPSFRGGRG 792


>AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical
           protein Y51F10.2 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 647 CRILKGQPEAYLKKNLASIHICDIM*VK*KSKI*LYRLTANGCGSVYHKPEEN 489
           CR +   P  Y++ N   I + D M  + ++   +  L   GC  VYH+ + N
Sbjct: 75  CRAVTQTPRNYIRSNYQLIELMDSM--RGEADHNISFLACVGCNGVYHEKDTN 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,904
Number of Sequences: 27780
Number of extensions: 333554
Number of successful extensions: 1258
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)