Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B22
         (916 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    66   9e-10
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    53   9e-06
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    51   5e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   6e-05
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    46   0.002
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.051
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.089
UniRef50_UPI0000E46833 Cluster: PREDICTED: similar to ice recrys...    37   0.83 
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   5.8  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.8  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 66.5 bits (155), Expect = 9e-10
 Identities = 40/62 (64%), Positives = 41/62 (66%)
 Frame = -3

Query: 533 RGAEPMEKRQQRGLFTVXGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAAERPSAX 354
           RGAEPMEKR +  L  V   LL  CS  L     LILWITVLPPLSEL PLAA ERPS  
Sbjct: 4   RGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERPSVA 59

Query: 353 SQ 348
           SQ
Sbjct: 60  SQ 61


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 53.2 bits (122), Expect = 9e-06
 Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 CINESANARGEAVCVLGALPLPRSLTXCARSFGCGERYQL-TQRR*YGYPQNQG 434
           CI + A AR EAV VL ALPL RS T C RS GCG      +  R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 23/25 (92%), Positives = 23/25 (92%)
 Frame = +2

Query: 536 TSITKIXXQVRGGETRQDYKDTRRF 610
           TSITKI  QVRGGETRQDYKDTRRF
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRF 48


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +3

Query: 300 RGEAVCVLGALPLPRSLTXCARSFGCGERYQLT 398
           R   +C  G +PLPRSLT  ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58



 Score = 41.1 bits (92), Expect = 0.038
 Identities = 18/25 (72%), Positives = 19/25 (76%)
 Frame = +2

Query: 536 TSITKIXXQVRGGETRQDYKDTRRF 610
           TSI K   Q+ GGETRQDYKD RRF
Sbjct: 92  TSIAKSDAQISGGETRQDYKDPRRF 116


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +2

Query: 536 TSITKIXXQVRGGETRQDYKDTRRF 610
           TSITK   Q+ GGETRQDYKDTRRF
Sbjct: 60  TSITKSDAQISGGETRQDYKDTRRF 84


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 79  DPDMIRYIDEFGQTTTRMQ 135
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.051
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 274 SALMNRPTRGERRFAYW 324
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.089
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 346 ERGSGRAPNTQTASPRALADSLMQ 275
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_UPI0000E46833 Cluster: PREDICTED: similar to ice
           recrystallisation inhibition protein; n=3;
           Coelomata|Rep: PREDICTED: similar to ice
           recrystallisation inhibition protein -
           Strongylocentrotus purpuratus
          Length = 436

 Score = 36.7 bits (81), Expect = 0.83
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = -2

Query: 753 ELGIPYQG*GYGERGXXFXEGEKGRXRYPGKGAGLGNRERGTRELSRG 610
           E GI  QG G GERG      E+G      +G+G+G +ERG RE   G
Sbjct: 209 ECGIGEQGSGIGERGSGIGGKERGIGE---QGSGIGEQERGIREQRSG 253


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 157 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 324
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 237 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 73
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,612,470
Number of Sequences: 1657284
Number of extensions: 12057378
Number of successful extensions: 30740
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30686
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)