Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B22
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     32   0.55 
04_04_0066 - 22495396-22495424,22495716-22495758,22495871-224961...    32   0.73 
06_03_0790 - 24636805-24637770                                         30   2.9  
08_02_0713 + 20335317-20335916,20336029-20336071,20336278-20336342     29   5.2  
08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538     29   5.2  
07_03_0083 - 13231110-13231517                                         29   5.2  
06_03_0464 + 21043706-21044305,21044418-21044460,21047402-21047421     29   5.2  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -2

Query: 627 RELSRGKRLVSL*SCRVSPPLT*XXIFVMLVQGGGAYGKTPAT 499
           R LSRGK L+S  + R  PP     + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>04_04_0066 -
           22495396-22495424,22495716-22495758,22495871-22496130,
           22496162-22496531
          Length = 233

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 24/72 (33%), Positives = 32/72 (44%)
 Frame = -2

Query: 777 GEGTDLTPELGIPYQG*GYGERGXXFXEGEKGRXRYPGKGAGLGNRERGTRELSRGKRLV 598
           GE    T E+ +   G   G R      G  GR R+ G+G G      G RE+ RG+  V
Sbjct: 152 GEVKTATVEMAVEMDG---GGRESECGGGGAGRRRWRGRGGGGEEGVEGGREVERGEAAV 208

Query: 597 SL*SCRVSPPLT 562
                RV+ P+T
Sbjct: 209 E----RVASPVT 216


>06_03_0790 - 24636805-24637770
          Length = 321

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 726 GYGERGXXFXEGE-KGRXRYPGKGAGLGNRERGTRELSRGKR 604
           G G+ G    +G  +GR R  G G G GN + G R ++ G R
Sbjct: 162 GDGDAGGRGGKGRGRGRGRGMGSGIGRGNGQNGDRGINSGGR 203


>08_02_0713 + 20335317-20335916,20336029-20336071,20336278-20336342
          Length = 235

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 693 GEKGRXRYPGKGAGLGNRERGTRELSRGKRLVSL*SCRVSPPLT 562
           G  GR R+ G+G G      G RE+ RG+  V     RV+ P+T
Sbjct: 167 GGAGRRRWRGRGGGGEEGVEGGREVERGEAAVE----RVASPVT 206


>08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538
          Length = 235

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 693 GEKGRXRYPGKGAGLGNRERGTRELSRGKRLVSL*SCRVSPPLT 562
           G  GR R+ G+G G      G RE+ RG+  V     RV+ P+T
Sbjct: 167 GGAGRRRWRGRGGGGEEGVEGGREVERGEAAVE----RVASPVT 206


>07_03_0083 - 13231110-13231517
          Length = 135

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 663 KGAGLGNRERGTRELSRGKR 604
           +G G G RERG RE++ G+R
Sbjct: 109 RGGGEGERERGEREMTEGER 128


>06_03_0464 + 21043706-21044305,21044418-21044460,21047402-21047421
          Length = 220

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 693 GEKGRXRYPGKGAGLGNRERGTRELSRGKRLVSL*SCRVSPPLT 562
           G  GR R+ G+G G      G RE+ RG+  V     RV+ P+T
Sbjct: 167 GGAGRRRWRGRGGGGEEGVEGGREVERGEAAVE----RVASPVT 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,909,093
Number of Sequences: 37544
Number of extensions: 369777
Number of successful extensions: 1071
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)