Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B22
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-li...    31   1.1  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   8.1  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   8.1  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   8.1  
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    28   8.1  

>U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-like
           protein protein32 protein.
          Length = 105

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 916 GGWGXXGGKXVGXVXGGWXFKG 851
           GGWG  GG+  G   GGW  +G
Sbjct: 62  GGWGRGGGRGYGGRGGGWGGRG 83


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 458 SHVLSCVIXLILWITVLPPLSELIPLAA 375
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 458 SHVLSCVIXLILWITVLPPLSELIPLAA 375
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 458 SHVLSCVIXLILWITVLPPLSELIPLAA 375
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 721 IXSPLVRYXQFRCKVRSLPSLGW 789
           + SPL  Y QF  K+RSLP L +
Sbjct: 304 VISPLASYLQFFVKIRSLPILAF 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,696
Number of Sequences: 27780
Number of extensions: 276227
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)