Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B20
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896...    52   6e-07
03_01_0226 + 1795120-1795686,1796040-1796171                           42   5e-04
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    29   3.6  
12_01_0206 + 1555278-1555448,1555710-1555772,1556236-1556307,155...    29   4.7  
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395...    29   4.7  
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579...    28   8.3  

>04_04_0791 +
           28088237-28088809,28089311-28089430,28089585-28089662,
           28089808-28089938,28090390-28090435,28090529-28090636
          Length = 351

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
 Frame = +3

Query: 459 KPETAKPVPSKVVIEEP----PLEENLNRIQLDGELAQTVDEALAILS--DKP---EVDR 611
           +PE AK   ++   EE      L  N NR     E A++VDEA+A +S  D       D+
Sbjct: 122 EPEAAKKRAARTAEEEEYERVVLVANTNRDDSIIE-ARSVDEAIARMSLVDSEGALPADK 180

Query: 612 HPEKRLKAAFTAFEQINLPRLKAENP 689
           HPE+RLKA+F AFE+  LP+LK E P
Sbjct: 181 HPERRLKASFKAFEEAELPKLKEEKP 206



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 138 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 260
           MPKK  G NSKA AAR+R+  A+ ++  + ++A E+  W +
Sbjct: 1   MPKKM-GVNSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40


>03_01_0226 + 1795120-1795686,1796040-1796171
          Length = 232

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
 Frame = +3

Query: 555 AQTVDEALAILSDKPEV----DRHPEKRLKAAFTAFEQINLPRLKAENP 689
           A++V++A+  +S   E     DRHPE+RLK ++ AFE+  L +LK E P
Sbjct: 156 ARSVEDAIVKMSIAAEPALPPDRHPERRLKVSYKAFEEAELAKLKEEKP 204



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 138 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 257
           MPKK  G N+KA AAR+R+  A+ ++  +  +A E+A W+
Sbjct: 1   MPKKM-GVNTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = +3

Query: 429 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD 608
           Q +Q ++   +PE A P+P +   E+P L++    ++ + E+ Q  ++ +    ++  V+
Sbjct: 529 QSNQPEKHADEPELAHPMPEQPEPEQPMLDK--AELEREEEVVQEREKEVVQEREEEAVE 586

Query: 609 RHPEK 623
            H EK
Sbjct: 587 EHKEK 591


>12_01_0206 +
           1555278-1555448,1555710-1555772,1556236-1556307,
           1556430-1556537,1556644-1556724,1556861-1556914,
           1557020-1557145,1557228-1557317,1557603-1557725,
           1557831-1557938,1558287-1558400,1558530-1558586,
           1558667-1558741,1558915-1558989
          Length = 438

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 462 PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAF 641
           P T   +P   ++E+   ++   R + D +   T+D+  A+ +D  E     +K    A 
Sbjct: 253 PMTRVTIPE--ILEDEWFKKGYKRPEFDEKYDTTLDDVYAVFNDSEEHHVTEKKEEPEAL 310

Query: 642 TAFEQINL 665
            AFE I++
Sbjct: 311 NAFELISM 318


>07_03_0539 - 19237573-19239169,19239258-19239410,19239505-19239566,
            19239855-19240103,19240248-19240337,19240453-19240632,
            19240713-19240942,19241558-19241735,19242327-19242432,
            19242786-19242883,19243683-19243813,19243908-19244087,
            19244179-19244443,19244557-19244627,19244707-19244922,
            19245147-19245294
          Length = 1317

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 504  EPPLEENLNRIQLDGELAQTVDEALAILS--DKPEVDRHPEKRLKAAFTAFEQINLP 668
            E PL+  L ++ L GE  + +DE L I+S    P V   P+ R + +  A E+  +P
Sbjct: 1041 EFPLDPTLAKMLLMGEQLECLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVP 1097


>12_01_1110 +
           11756814-11757485,11757566-11757644,11757705-11757991,
           11758072-11758131,11758311-11758976
          Length = 587

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +3

Query: 453 MAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHP 617
           +A  + AK   SK+  + P ++ ++ +   + EL + VD+A A +SD PE D+ P
Sbjct: 275 LAPKKKAKKKKSKLADDLPAVDPSIEQALDEEELREDVDQAAAEMSD-PE-DKTP 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,306
Number of Sequences: 37544
Number of extensions: 250314
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)