Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B18
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    42   2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   4.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   4.9  
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    26   6.5  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    26   6.5  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   8.5  

>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +3

Query: 150 KIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 302
           K +G++TY +S  +QR  AG       N+FRR       V  PF I Y IY
Sbjct: 21  KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIY 71


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 201 YAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 317
           Y    + G   +++    ++ KV P   I YL+YE  ++
Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 384  LQTMFIDHFQNQQGSSVIVCDA 319
            L ++ +DHFQN   SS  + DA
Sbjct: 940  LHSLIVDHFQNDSNSSADLLDA 961


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 129 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEG 308
           +  G++     L TYK+         GA+  G+P+ +   +  V   V    +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 309 V 311
           V
Sbjct: 80  V 80


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 129 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEG 308
           +  G++     L TYK+         GA+  G+P+ +   +  V   V    +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 309 V 311
           V
Sbjct: 80  V 80


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 287 NDEGRDYFKNALTKSSEDIRNTI 219
           N+E  DY+ NA ++ SED  N I
Sbjct: 18  NEEDDDYYSNAHSEKSEDHSNHI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,172
Number of Sequences: 5004
Number of extensions: 42072
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)