Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B18
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    64   2e-10
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    62   5e-10
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.6  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   6.1  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   6.1  
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
           protein F45H10.2 protein.
          Length = 90

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +3

Query: 120 TMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYL 296
           +MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +  +P  I  YL
Sbjct: 7   SMGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYL 66

Query: 297 IYEGVEREHHRLSRKNPADFENDQ 368
           +Y+  ++ +   +RKNPADF NDQ
Sbjct: 67  LYDWAKKTNVAANRKNPADFANDQ 90


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
           protein R07E4.3 protein.
          Length = 90

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = +3

Query: 123 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYLI 299
           MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +  +P  I  YL+
Sbjct: 8   MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67

Query: 300 YEGVEREHHRLSRKNPADFENDQ 368
           Y+  ++ +   +RKNPADF ND+
Sbjct: 68  YDWAKKTNVAANRKNPADFANDE 90


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 806 PPPPPXXXGGFXFXXPXXXXPXXXKPXXP 892
           PPPPP   GGF    P    P    P  P
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 806 PPPPPXXXGGFXFXXPXXXXPXXXKPXXP 892
           PPPPP   GGF    P    P    P  P
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 806 PPPPPXXXGGFXFXXPXXXXPXXXKPXXP 892
           PPPPP   GGF    P    P    P  P
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPPGMFAPMAP 381


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 301 YIKYPMMKGGTTLKTLSRNLLKIL-GIPFEI 212
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 773 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 803


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 301 YIKYPMMKGGTTLKTLSRNLLKIL-GIPFEI 212
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 893 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 923


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 216 SNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVERE 320
           + G   ++R    +  KV+P   I Y++YE V ++
Sbjct: 491 TEGFTGLYRGITPNFMKVIPAVSISYVVYEKVRKQ 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,098
Number of Sequences: 27780
Number of extensions: 295121
Number of successful extensions: 785
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)