Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B17
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   175   9e-45
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   175   9e-45

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  175 bits (425), Expect = 9e-45
 Identities = 77/110 (70%), Positives = 89/110 (80%)
 Frame = +2

Query: 221 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 400
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 401 RSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALGGSRCCYRRPS 550
           RSGQ AFGNMCR GRMFAPTK WR+WH +VN  ++R A+  +      PS
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPS 135



 Score =  126 bits (303), Expect = 6e-30
 Identities = 55/94 (58%), Positives = 75/94 (79%)
 Frame = +3

Query: 561 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 740
           ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RN
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRN 198

Query: 741 RRRIQRKGPLIIFNKDQGLTRALPQHPGVELLNV 842
           RR +QR+GPL++FN+D G+ +A    PGVE++NV
Sbjct: 199 RRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNV 232


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  175 bits (425), Expect = 9e-45
 Identities = 77/110 (70%), Positives = 89/110 (80%)
 Frame = +2

Query: 221 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 400
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 401 RSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALGGSRCCYRRPS 550
           RSGQ AFGNMCR GRMFAPTK WR+WH +VN  ++R A+  +      PS
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPS 135



 Score =  125 bits (302), Expect = 7e-30
 Identities = 55/94 (58%), Positives = 75/94 (79%)
 Frame = +3

Query: 561 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 740
           ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RN
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRN 198

Query: 741 RRRIQRKGPLIIFNKDQGLTRALPQHPGVELLNV 842
           RR +QR+GPL++FN+D G+ +A    PGVE++NV
Sbjct: 199 RRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,109
Number of Sequences: 5004
Number of extensions: 66017
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)