Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_B14
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 93 3e-19
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 92 5e-19
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 92 5e-19
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.17
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.52
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 0.91
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 30 2.1
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 30 2.8
07_03_1136 + 24218601-24218734,24218769-24219906 30 2.8
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362... 29 3.7
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 92.7 bits (220), Expect = 3e-19
Identities = 38/55 (69%), Positives = 42/55 (76%)
Frame = +1
Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 288
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K+
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 92.3 bits (219), Expect = 5e-19
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +1
Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 92.3 bits (219), Expect = 5e-19
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +1
Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = +3
Query: 654 GPPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPG 827
GPPP A P P +P PP P G G P PP G P G P G
Sbjct: 343 GPPPPPP--AKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVPTG 398
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +3
Query: 660 PPGERXFAFWAPLPVSXXQ*TPWPPVPXX-GGXXGXPXPPKGGNXXXSPXIRGXPP 824
PP F P P + P PP P GG G P PP P + G PP
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPP 1218
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.5 bits (68), Expect = 0.91
Identities = 22/59 (37%), Positives = 22/59 (37%)
Frame = +3
Query: 654 GPPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPGK 830
GPPP A AP P P PP G G P P G P RG PP K
Sbjct: 348 GPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPG----GPRARGPPPFK 402
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +3
Query: 663 PGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPG 827
P +++AP PV Q TP PP P P PP P PPG
Sbjct: 256 PSASVSSYYAPTPVMSMQPTPMPPPPQMSYGYS-PYPPMMMPPPPPPEYLYGPPG 309
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 693 PLPVSXXQ*TPWPP--VPXXGGXXGXPXPPKGGNXXXSPXIRGXPPGK 830
P+P S Q T +PP G G P PP G N RG P GK
Sbjct: 777 PIP-SSGQLTTFPPSRYDNNNGLCGIPLPPCGHNPPWGGRPRGSPDGK 823
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = -2
Query: 823 GGXPRIXGXNXXLPP--FGGXGXPXXPPXXGTGGQGVH*XXETGRGAQKANXLSPGGG 656
GG P G PP GG G P PP G GG G G G A GGG
Sbjct: 95 GGAPGPLGGGGARPPGGGGGGGPPSLPPGAG-GGGGARPPAPGGGGGGGAPRRVLGGG 151
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -2
Query: 826 PGGXPRIXGXNXXLPPFGGXGXPXXPPXXGTGGQGVH*XXETGRGAQKANXLSPGGG 656
PGG G LPP G G PP G GG G G G P GG
Sbjct: 109 PGGGG--GGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGG 163
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 784 PPFGGXGXPXXPPXXGTGGQGVH*XXETGRGAQKANXLSPGGG 656
PP GG G P G GG G G G +PGGG
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGG 202
>04_01_0272 +
3624910-3625247,3625286-3625853,3625920-3626895,
3627053-3627087
Length = 638
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 657 PPPGERXFAFWAPLPVSXXQ*TPWPPVP 740
PPP + FWAP S Q T PP+P
Sbjct: 70 PPPEHQLVPFWAPFYTSVDQ-TTSPPIP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,879,931
Number of Sequences: 37544
Number of extensions: 384082
Number of successful extensions: 757
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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