Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B14
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   101   5e-22
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    36   0.028
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    36   0.028
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   1.1  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    31   1.4  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    31   1.4  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   1.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   1.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   1.9  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    30   2.5  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   7.5  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    28   10.0 

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score =  101 bits (243), Expect = 5e-22
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 291
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 657 PPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPP 824
           PPP         P+P +    TP PP P   G    P PP  G     P + G PP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGM-TPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 657 PPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPP 824
           PPP         P+P +    TP PP P   G    P PP  G     P + G PP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGM-TPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/71 (29%), Positives = 26/71 (36%)
 Frame = +3

Query: 654 GPPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPGKN 833
           GPP G   +      P    Q  P PP P      G P PP+ G+    P  +  PP   
Sbjct: 701 GPPGG---YPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHG 757

Query: 834 XXXXKXPQKGP 866
               +  Q GP
Sbjct: 758 QYQPQQQQGGP 768


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/71 (29%), Positives = 26/71 (36%)
 Frame = +3

Query: 654 GPPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPGKN 833
           GPP G   +      P    Q  P PP P      G P PP+ G+    P  +  PP   
Sbjct: 701 GPPGG---YPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHG 757

Query: 834 XXXXKXPQKGP 866
               +  Q GP
Sbjct: 758 QYQPQQQQGGP 768


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 171 RIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 272
           RIP  P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 729 PPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPP 824
           PP P  GG    P PP+ G+    P  RG PP
Sbjct: 280 PPPPPAGGS---PPPPRAGSPPPPPPPRGSPP 308


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 729 PPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPP 824
           PP P  GG    P PP+ G+    P  RG PP
Sbjct: 301 PPPPPAGGS---PPPPRAGSPPPPPPPRGSPP 329


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 729 PPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPP 824
           PP P  GG    P PP+ G+    P  RG PP
Sbjct: 286 PPPPPAGGS---PPPPRAGSPPPPPPPRGSPP 314


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +3

Query: 723 PWPPVPXXG-GXXGXPXPPKGGNXXXSPXIRGXPPGKNXXXXKXPQKGP 866
           PW P P    G  G P PP       SP + G          K P KGP
Sbjct: 144 PWKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGP-KGP 191


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 284
           M I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
 Frame = +3

Query: 657 PPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGX-PXPPKGGNXXXSPXIRGXPPGKN 833
           P PG+      AP         P PP P      G  P PP       +P  R  PP + 
Sbjct: 101 PVPGQEGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRP 160

Query: 834 XXXXKXPQKGP 866
                 PQ+ P
Sbjct: 161 PMTPPSPQRRP 171


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 729  PPVPXXGGXXGXPXPPKGGNXXXS-PXIRGXPP 824
            PP     G  G P PP+GG+     P + G PP
Sbjct: 1561 PPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPP 1593


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/43 (41%), Positives = 18/43 (41%)
 Frame = -2

Query: 784 PPFGGXGXPXXPPXXGTGGQGVH*XXETGRGAQKANXLSPGGG 656
           P  GG G P  PP  G GG G         G    N LS GGG
Sbjct: 264 PMGGGGGYPQPPPQQGGGGGGA--------GGMFRNILSSGGG 298


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 729 PPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPGKNXXXXKXPQKG 863
           P  P  GG  G P PP       SP   G  PG      K  Q+G
Sbjct: 159 PGAPAQGGGQGPPGPPGPAGSAGSPGQAG-APGNPGSPGKSGQRG 202


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 729 PPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPGKNXXXXKXPQKG 863
           P  P  GG  G P PP       SP   G  PG      K  Q+G
Sbjct: 159 PGAPAQGGGQGPPGPPGPAGSAGSPGQAG-APGNPGSPGKSGQRG 202


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 183 MPILLQQAWLNPQVRFEHMQTVLQRV 260
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 19/57 (33%), Positives = 20/57 (35%)
 Frame = +3

Query: 657 PPPGERXFAFWAPLPVSXXQ*TPWPPVPXXGGXXGXPXPPKGGNXXXSPXIRGXPPG 827
           PPP    F   AP         P+PP    G   G P PP G      P   G  PG
Sbjct: 177 PPPVYPPFGQPAPQMSGQRMPYPYPPQGMPGYPGGPPPPPHGYEGYPPP---GAQPG 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,695
Number of Sequences: 27780
Number of extensions: 291663
Number of successful extensions: 781
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)