Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B09
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +1

Query: 562  HPXXLXPPLXXXGXXPXXXPPTPKXXXPRXXPPXXXXXLPKGXXXAPP 705
            HP    P        P    PTP        PP     +P G   APP
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 28/97 (28%), Positives = 28/97 (28%)
 Frame = +3

Query: 582 PPXXXGXXXXXXPPHPXKXXPXXXPPPXXXXXS*RXXXRPPPXLFSSPARGXXKKPLXXX 761
           PP          PP      P   PPP     S     R PP L SS A      P    
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPP---PPPPRSAPS---TGRQPPPLSSSRA---VSNPPAPP 392

Query: 762 GGPPXEKKKNXXPPXLXXXXXKPPSPXXPXLPFSPPP 872
              P        P         PP P  P LP S PP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 607 PXXXPPTPKXXXPRXXPPXXXXXLPKGXXXAPP 705
           P   PP+     P   PP     LP G   APP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,413
Number of Sequences: 5004
Number of extensions: 15628
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)