Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_B08
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    63   4e-11
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   7.9  

>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = +3

Query: 225 ATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLHGISGDTNVQGEEVKKLDVLSNDLFINML 404
           A+G+L+ LLNS+Q + K I + +RKA +  L G+SG  N  G+E KKLD + ND+FI  +
Sbjct: 43  ASGELSLLLNSLQFSFKFIANTIRKAELVNLIGLSGIVNSTGDEQKKLDKICNDIFITAM 102

Query: 405 KSS 413
           KS+
Sbjct: 103 KSN 105



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = +1

Query: 430 LVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIY 567
           +VSEE + ++ V++   G Y V  DP+DGSSNI+  VSVG+IF IY
Sbjct: 111 IVSEEEEDLIVVDSN--GSYAVTCDPIDGSSNIDAGVSVGTIFGIY 154


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 27  IGNSLRFAVSWRYVLRADISRNVLGSLY 110
           IG S     SW+ +LRA + R VLGS +
Sbjct: 336 IGQSTVQLDSWKKILRAQMLRYVLGSSF 363


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 557 KIDPTDTRHSMLEEPSRGSKHTTYLPLRSVSTCKTVWFS 441
           K+D  D +  +L   SR    +T +P + +S+C+ +W S
Sbjct: 227 KMDQFDLKSGVLSFISRDP--STQVPYKDMSSCEALWIS 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,749
Number of Sequences: 5004
Number of extensions: 50323
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)