Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_B08
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1458 + 37512954-37513112,37513217-37513324,37513357-375134... 84 2e-16
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881... 81 1e-15
05_04_0448 - 21349877-21349990,21350263-21350338,21350418-213505... 71 2e-12
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 43 3e-04
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 35 0.096
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 29 3.6
02_02_0707 + 13144147-13144788,13145115-13148663 29 6.3
02_03_0348 + 18005405-18005427,18005594-18005786,18005874-180059... 28 8.4
>01_06_1458 +
37512954-37513112,37513217-37513324,37513357-37513431,
37513520-37513581,37513690-37513756,37514161-37514274,
37514357-37514443,37514571-37514641,37514718-37514783,
37514941-37515027,37515127-37515202,37515321-37515424,
37515550-37515583
Length = 369
Score = 83.8 bits (198), Expect = 2e-16
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 20/117 (17%)
Frame = +3
Query: 141 MTQQGPAFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLH 320
M + A+ + MT+TR+VL +Q P A GDLT LL+ I K + SAV KAG+AKL
Sbjct: 1 MDHEADAYRTDLMTITRYVLNEQSRNPEARGDLTILLSHIVLGCKFVASAVNKAGLAKLI 60
Query: 321 GISGDTNVQ--------------------GEEVKKLDVLSNDLFINMLKSSFTTCLL 431
G++G+TNVQ GEE KKLDVLSN++F+ L SS TC+L
Sbjct: 61 GLAGETNVQASVPGNNCHLSQFLVSEIEIGEEQKKLDVLSNEVFVKALVSSGRTCVL 117
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1
Query: 430 LVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIY 567
LVSEE++ V+ RGKY VCFDPLDGSSNI+C VS+G+IF IY
Sbjct: 117 LVSEEDEEATFVDPALRGKYCVCFDPLDGSSNIDCGVSIGTIFGIY 162
>03_02_0486 -
8811539-8811610,8811725-8812231,8812327-8812551,
8812648-8813064
Length = 406
Score = 81.0 bits (191), Expect = 1e-15
Identities = 43/81 (53%), Positives = 57/81 (70%)
Frame = +3
Query: 180 TLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLHGISGDTNVQGEEV 359
TLT W+L Q++ A T G++T +L SI TA K I S V++A I+ L G+ G NVQGE+
Sbjct: 72 TLTTWLLKQEQ-AGTIDGEMTIVLASISTACKQIASLVQRAPISNLTGVQGAVNVQGEDQ 130
Query: 360 KKLDVLSNDLFINMLKSSFTT 422
KKLDV+SN++F N LKSS T
Sbjct: 131 KKLDVVSNEVFSNCLKSSGRT 151
Score = 59.3 bits (137), Expect = 4e-09
Identities = 30/61 (49%), Positives = 34/61 (55%)
Frame = +1
Query: 394 STCLNPHLPHVSLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYXX 573
S CL + SEE + VE G Y+V FDPLDGSSNI+ VS GSIF IY
Sbjct: 142 SNCLKSSGRTGVIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSP 201
Query: 574 N 576
N
Sbjct: 202 N 202
>05_04_0448 -
21349877-21349990,21350263-21350338,21350418-21350504,
21350706-21350771,21350855-21350925,21351030-21351116,
21351201-21351314,21351612-21351678,21351807-21351868,
21351960-21352085,21352091-21352381
Length = 386
Score = 70.5 bits (165), Expect = 2e-12
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 430 LVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIY 567
LVSEEN+ + V+ RGKY VCFDPLDGSSNI+C VS+G+IF IY
Sbjct: 142 LVSEENEEAIIVDAPLRGKYCVCFDPLDGSSNIDCGVSIGTIFGIY 187
Score = 62.5 bits (145), Expect = 4e-10
Identities = 36/86 (41%), Positives = 48/86 (55%)
Frame = +3
Query: 141 MTQQGPAFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLH 320
M A + MT+TR VL +Q P + GD T LL+ I K + SAV KAG+AKL
Sbjct: 1 MDHAAEAQRTDLMTITRHVLNEQGRHPESRGDFTILLSHIVLGCKFVASAVNKAGLAKLI 60
Query: 321 GISGDTNVQGEEVKKLDVLSNDLFIN 398
G++GDTNVQ + S LF++
Sbjct: 61 GLAGDTNVQASNPISDPLYSTLLFLH 86
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +3
Query: 300 AGIAKLHGISGDTNVQGEEVKKLDVLSNDLFINMLKSSFTTCLL 431
A I++ H + + VQGEE KKLDVLSN++F+ L SS TC+L
Sbjct: 101 ASISRCH--TYEVAVQGEEQKKLDVLSNEVFVKALVSSGRTCVL 142
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 43.2 bits (97), Expect = 3e-04
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 430 LVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIY 567
+ SEEN + V + YVV DPLDGS NIE + G+IF IY
Sbjct: 95 MASEENHLPIWVSND--SPYVVVTDPLDGSRNIEVSIPTGTIFGIY 138
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 34.7 bits (76), Expect = 0.096
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 481 GKYVVCFDPLDGSSNIECLVSVGSIFAIY 567
G + V FDPLDGSS ++ +VG+IF ++
Sbjct: 168 GGFSVAFDPLDGSSIVDTNFTVGTIFGVW 196
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 75 ADISRNVLGSLYHFISRILSRTMTQQGPAFDVNAMTLTRWVLAQQRTAPTA 227
+D+ R +L LYH I R +T +QG + M+ +RW+ +++ T+
Sbjct: 735 SDLPREMLSELYHSICRNEIKTTPEQGMGY--FEMSPSRWIDLMRKSKSTS 783
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 78 DISRNVLGSLYHFISRILSRTMTQQGPAFDVNAMTLTRWV 197
D+ R L LY+ I R RT+ +QG + M+ +RWV
Sbjct: 676 DLPREFLSELYYSICRNEIRTIPEQGAG--CSEMSFSRWV 713
>02_03_0348 +
18005405-18005427,18005594-18005786,18005874-18005954,
18007739-18007846,18007924-18008193,18008454-18008549
Length = 256
Score = 28.3 bits (60), Expect = 8.4
Identities = 23/84 (27%), Positives = 34/84 (40%)
Frame = +1
Query: 295 GKPVSLNYMESPVTQTFKVKRSKNWTSFPTTSSSTCLNPHLPHVSLVSEENQTVLQVETE 474
G PVS+N + V + RS SF T S CL+ S + L+ ++
Sbjct: 11 GSPVSMNSLREAVKAGEEGSRSNLHKSFYTNVPSECLDD-----MERSAAEKMGLEFDSS 65
Query: 475 RRGKYVVCFDPLDGSSNIECLVSV 546
+ +V FD S I C +V
Sbjct: 66 KEHYHVKVFDKRQSDSTITCKCTV 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,480
Number of Sequences: 37544
Number of extensions: 343020
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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