Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_B07
(995 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.37
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.77
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.77
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.77
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.77
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 0.89
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 855 PPPPPPPP 832
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect(2) = 0.37
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 851 PPPPPPPP 828
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 489 PPPPPTXXGGXKXPPPP 539
PPPPP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPP 27
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 489 PPPPPTXXGGXKXPPPP 539
PPPPP + PPPP
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
Score = 22.2 bits (45), Expect(2) = 0.37
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1
Query: 851 PPPPPPPPXXXXXXKXKK 798
PP PPPP K +K
Sbjct: 20 PPSQPPPPPPPGYVKKRK 37
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 855 PPPPPPPPP 829
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 854 PPPPPPPPP 828
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 855 PPPPPPPPP 829
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 853 PPPPPPPPP 827
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 7.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 855 PPPPPPPPP 829
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 26.2 bits (55), Expect = 7.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 853 PPPPPPPPP 827
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.77
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 487 PXPPPPXXGGGXXXPPPP 540
P PPPP G PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 855 PPPPPPPPP 829
PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 853 PPPPPPPPP 827
PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Frame = +3
Query: 483 GXPPPPPTXXG--GXKXPPPP 539
G PPPPP G G PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 487 PXPPPPXXGGGXXXPPPP 540
P PPPP G PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 487 PXPPPPXXGGGXXXPPPP 540
P PPPP G PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 487 PXPPPPXXGGGXXXPPPP 540
P PPP G G PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 487 PXPPPPXXGGGXXXPPPP 540
P PPP GG PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 855 PPPPPPPP 832
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 853 PPPPPPPP 830
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 851 PPPPPPPP 828
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 855 PPPPPPPPP 829
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 29.5 bits (63), Expect = 0.77
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 854 PPPPPPPPP 828
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 2.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 855 PPPPPPPP 832
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 2.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 852 PPPPPPPP 829
PPPPPP P
Sbjct: 907 PPPPPPLP 914
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 0.89
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 853 PPPPPPP 833
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 0.89
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 850 PPPPPPP 830
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 23.0 bits (47), Expect(2) = 9.0
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 487 PXPPPPXXGGGXXXPPPP 540
P PPPP P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355
Score = 21.0 bits (42), Expect(2) = 9.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 475 KKXXPXPPPP 504
KK P PPPP
Sbjct: 308 KKRPPPPPPP 317
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 535 GGGXXXPPXXVGGGGGXPXFXGGG 464
GGG PP GG GG F G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 855 PPPPPPPP 832
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 852 PPPPPPPP 829
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 850 PPPPPPPP 827
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 855 PPPPPPPP 832
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 853 PPPPPPPP 830
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 851 PPPPPPPP 828
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,944
Number of Sequences: 5004
Number of extensions: 28214
Number of successful extensions: 569
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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