Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_B05
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 106 4e-24
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.66
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 29 0.87
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 4.6
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 4.6
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 26 6.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.1
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 6.1
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 8.1
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 106 bits (255), Expect = 4e-24
Identities = 57/125 (45%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Frame = +1
Query: 124 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 300
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT Q GD+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 301 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKV 480
E+ ++V + RL T +F DKKSY Y+K YMK + A+L+E P++V VF+ N
Sbjct: 60 EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117
Query: 481 MKDIL 495
+K IL
Sbjct: 118 VKKIL 122
Score = 53.6 bits (123), Expect = 4e-08
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +2
Query: 497 AGFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 640
A FK+ F+ GESMD D MV +M YR+ DG P M+FFK GL EKF
Sbjct: 123 ANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 319 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 465
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 681 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 568
AS ELL+ NFS+ R CL+N ++ CVP +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 598 WYLRTIKVSIFHHGNHAITIHRLPSKELKFL 506
WY++T K+SI N+ + +R P + FL
Sbjct: 12 WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 816 DVIILLLYAVYFLNTKLFSLVMREASSCQD 727
D +L Y++ LNT L S ++ +CQD
Sbjct: 822 DTAYILAYSIIMLNTDLHSPQVKNRMTCQD 851
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 161 ISSPVIMSL*IFILMDWRRLKII 93
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 226 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 369
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 485 KTSSAGFKELQFFTGESMDCDGMVAMMEYRDFDGTQ 592
KT+S+GF E FF+ +S+D + + ++ +D +
Sbjct: 83 KTNSSGFFESGFFSRKSVDPEERIVLIYTTHYDNRE 118
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 596 VFAYHQSLYIPSWQPC-HHN 540
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 183 HFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 73
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 339 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 241
V++D +NS LDG + + S R +T LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,429
Number of Sequences: 5004
Number of extensions: 67682
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -