Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A23
         (1183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0862 + 28353235-28354431                                         30   4.1  

>03_05_0862 + 28353235-28354431
          Length = 398

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -3

Query: 545 SKWNRPSVIFXGXLGEPPXRKQYPFGFLEFXGXQPF--VRIFSEKXKEIPXLVLAKXPLG 372
           + W   + IF    G P  R   P+  L      P    R    + +E+P + L    LG
Sbjct: 32  ASWRAAAAIFVDGRGRP--RPDRPWLLLPADAPDPDDGCRFVVSRDREVPVVALPAR-LG 88

Query: 371 RHGGKPFVP 345
           R GG+ FVP
Sbjct: 89  RDGGRGFVP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,399,205
Number of Sequences: 37544
Number of extensions: 457561
Number of successful extensions: 827
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)