Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A21
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   109   5e-25
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.053
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.86 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   1.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.6  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   8.0  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  109 bits (262), Expect = 5e-25
 Identities = 49/90 (54%), Positives = 72/90 (80%)
 Frame = +3

Query: 195 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 374
           P SKELR+++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ IER+ REKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 375 ATAYVGIHPSKCVIVKLKMNKDRKAILDRR 464
           A+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 92  ASAPVGIDASKVVITKLHLDKDRKDLIVRK 121



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +2

Query: 98  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLX*GTKTKIQCKIHAYSQRR 256
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
 Frame = +1

Query: 592 PPPXXXPPXPXXXXXXXXXXXPXXPXXGPRXPAPPXG----GXPXPPPPXP 732
           PPP    P P           P     GP  P PP G    G P PPPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIM--GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 685 PAPPXGGXPXPPPPXPXXG 741
           PAP  GG P PPPP    G
Sbjct: 754 PAPIMGGPPPPPPPPGVAG 772


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 386 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 237
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 351 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKYXEETG 524
           I R+KA GAT  +   P K ++  +K   D  A ++     ++  + K+   Y  +TG
Sbjct: 724 IGRDKAIGATVRIRRGPMKGLLGVIKDTTDANARVELHTGNKMVTIPKENLLYTTKTG 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = -3

Query: 731 GXGGGGXGXPPXGGAGXRG-PXXGXXGXXXXXXXXXXXGXGGXXXGGG 591
           G  GGG G PP G  G  G    G  G           G GG   G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +1

Query: 664 PXXGPRXPAPPXGGXP--XPPPPXP 732
           P   P  P PP G  P   PPPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 664 PXXGPRXPAPPXGGXPXPPPPXPXXG 741
           P   P  P PP    P  PPP P  G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 664  PXXGPRXPAPPXGGXPXPPPP 726
            P   P+  APP    P PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPP 1710



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
 Frame = +1

Query: 583  SXXPPPXXXP-PXPXXXXXXXXXXXPXXPXXGPRXPAPPXGGXPXPPPPXP 732
            S  PP    P P P           P  P   P  P PP      P  P P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = +2

Query: 539 PLKPIVFKINKIFXTPXPXPPXXPXXXXPXXXPXPXPXXPXXXXXAP 679
           P  P +   ++    P P PP  P    P   P   P  P     AP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 268 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 354
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,515
Number of Sequences: 5004
Number of extensions: 51388
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)