Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A17
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.23 
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    29   0.92 
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    28   2.1  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    27   3.7  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   4.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   6.5  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   8.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.6  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +2

Query: 197  PDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQG--SSGYTAPDGTPIQITYIADANG 370
            PD   +      G  G+E     + G   A+   +G  S GYT+P  + +   Y   +  
Sbjct: 1500 PDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557

Query: 371  YQPSGAHLPTTPAPVP-IPDYIARAIEYIRTHP 466
            Y PS     T+PA +P  P Y   +  Y  T P
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
 Frame = -2

Query: 497 LXYVGRPLAWV-GEF*CTRWPGRCNLGLGQGLG*-WADGHPKA----GIRW---RQQCK* 345
           L Y  RP  W  G F   + P  C +G G+       + H KA    GI       +   
Sbjct: 141 LDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMP 200

Query: 344 SEWEYHQGQCSRLNLG-RRWM 285
           S+WEY  G C+ + +G + WM
Sbjct: 201 SQWEYQVGPCAGIEMGDQLWM 221


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 423 QITSPGPSSTSELTHPSQRSANVXKLYD 506
           Q+T+   S TS +THP Q S +V   +D
Sbjct: 152 QLTTENSSDTSSMTHPVQPSPSVLGSFD 179


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = +2

Query: 167 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQI 346
           Q+ ++ +D+ PD        S G    E    + +   +    V  SS +    G    +
Sbjct: 96  QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155

Query: 347 TYIADANGYQPSGAHLPTTPAPVP 418
           T+ A   GY P+     T P P P
Sbjct: 156 TFAAARRGYGPALPGSYTIPEPNP 179


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 822 NKARGLXQIFPKXKXXGVPRAXLXW 748
           +K+ GL   FP  K  GVPR  L W
Sbjct: 632 SKSIGLLFFFPLVKVCGVPRDTLQW 656


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 414  SQSQITSPGPSSTSELTHPSQRSANVXK 497
            S+ +I++  P+S + LT PS RSA++ K
Sbjct: 1203 SKKRISNGSPTSWNLLTKPSPRSASLPK 1230


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 257 ALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 412
           AL+  G    S  VQ  + YT+  G P   T +A A  +  +G ++    +P
Sbjct: 43  ALLPTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 387 PICPLPQPLSQSQITSPGPSSTSELTHPSQRSANV 491
           P  P P P S   I S  P   S L  P+Q +A V
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,822
Number of Sequences: 5004
Number of extensions: 61793
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)