Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A17
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    96   3e-22
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.42 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 51/112 (45%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
 Frame = +2

Query: 155 EADAQIVSQDADV-FPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDG 331
           + DA I SQ  +V F   Y   ++TSNGIS QE G       E   ++ QGS  YTAPDG
Sbjct: 24  DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDG 82

Query: 332 TPIQITYIADANGYQPSGAHLPTTPAPVPIPDYIARAIEYIRTHPPKPEVGQ 487
             + ITY+AD NG+Q  G+H+PT P   PIP  I RA+E+   HP + + GQ
Sbjct: 83  QQVSITYVADENGFQVQGSHIPTAP---PIPPEIQRALEWNAAHPEEDDGGQ 131


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 768 EPPLLXSWGKFGEAPWP 818
           +PPL  SW K G++P+P
Sbjct: 638 DPPLTISWLKDGQSPFP 654



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 574  TRHINDRQCXGLRCFNNSRPYQLSYN 497
            +RH    +  GL C N  + Y  S+N
Sbjct: 1454 SRHATSHELKGLLCGNTYQLYLTSHN 1479


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 574  TRHINDRQCXGLRCFNNSRPYQLSYN 497
            +RH    +  GL C N  + Y  S+N
Sbjct: 1450 SRHATSHELKGLLCGNTYQLYLTSHN 1475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,422
Number of Sequences: 438
Number of extensions: 5898
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)