Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A16
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    28   1.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.5  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   1.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   2.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   6.1  

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 97  ICLFYL*LVKLEYCCCVILKAINIL 171
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 97  ICLFYL*LVKLEYCCCVILKAINIL 171
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFILLLLGLIYCSKIVVKAIPLI 152


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 97  ICLFYL*LVKLEYCCCVILKAINIL 171
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/71 (21%), Positives = 34/71 (47%)
 Frame = +2

Query: 254 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 433
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 434 GLMLMLIATPD 466
            ++   + TP+
Sbjct: 790 SVVARTVYTPN 800


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 531 AWGPWLEYVSVVDPXYHNNCSARHYPGYLYASPAGCYAC*TRXLAYP 671
           ++ PWL+   VV P  H+  S   +P Y+  SP   +AC      +P
Sbjct: 92  SYDPWLDANGVV-PLPHDVAS---HPSYMVQSPTSYHACSNNQSPFP 134


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPP 859
           PA   IP  P  P     P P PPP   G  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 129  KFHKSQIKQTNNFRSAL*RIWQVNPTF 49
            KF+ S+++  +N      ++W VNP F
Sbjct: 1458 KFYDSRLEDGDNMAEKTQQVWHVNPKF 1484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,068
Number of Sequences: 5004
Number of extensions: 57672
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)