Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_A16
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.62
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.62
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.62
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 32 0.62
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.62
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 32 0.62
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 0.82
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.4
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 3.3
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.4
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 4.4
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.62
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPP 859
P P P PP G IP PPP G PP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPP 859
P P + P PP P P PPP G P
Sbjct: 96 PPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAP 127
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFG--PI---PXPPPXXXGXPPXNGG 871
P P I P PP G PI P PPP G PP +GG
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGG 757
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPP-XXXGXPP 859
P S P P PPG P P PPP G PP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPPXNGG 871
P + P P P GP P PPP G PP GG
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPP--GGLPPITGG 741
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFG--PI---PXPPPXXXGXPPXNGG 871
P P I P PP G PI P PPP G PP +GG
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGG 757
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPP-XXXGXPP 859
P S P P PPG P P PPP G PP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPPXNGG 871
P + P P P GP P PPP G PP GG
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPP--GGLPPITGG 741
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPP 859
PA +P P G P+P PPP G PP
Sbjct: 1302 PAPGNLPGSSRPSGNRKQPLPPPPPMIRGPPP 1333
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFG--PI---PXPPPXXXGXPPXNGG 871
P P I P PP G PI P PPP G PP +GG
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGG 340
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPP-XXXGXPP 859
P S P P PPG P P PPP G PP
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPPXNGG 871
P + P P P GP P PPP G PP GG
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPP--GGLPPITGG 324
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPP 859
PA +P P G P+P PPP G PP
Sbjct: 1302 PAPGNLPGSSRPSGNRKQPLPPPPPMIRGPPP 1333
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPP 838
P+ P P P PP P+P PPP
Sbjct: 1336 PSPPPPPPPPPPPSDDLTPVPPPPP 1360
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 758 WYPASPXIPXX-PXPPGXXFGPIPXPPPXXXGXPPXNGG 871
W P P P P PPG P P PPP G PP GG
Sbjct: 296 WPPPPPPPPGRTPGPPGMPGMP-PPPPPSRFG-PPGMGG 332
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 758 WYPASPXIPXX-PXPPGXXFGPIPXPPPXXXGXPPXNGG 871
W P P P P PPG P P PPP G PP GG
Sbjct: 306 WPPPPPPPPGRTPGPPGMPGMP-PPPPPSRFG-PPGMGG 342
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPP 838
P +P P P PPG +P PPP
Sbjct: 125 PGAPGRPGNPGPPGRDGALLPGPPP 149
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 764 PASPXIPXXPXPPGXXFGPIPXPPPXXXGXPPXN 865
P P P PP F P+ PPP G P N
Sbjct: 435 PPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGN 468
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 791 PXPPGXXFGPIPXPPPXXXGXPPXNG 868
P PPG P P PPP G PP G
Sbjct: 707 PPPPGIPGYP-PAPPPPGVGPPPPQG 731
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 505 WIWINIRHEHGVPGLNMSV*LTPSIIITALLGTTLGI 615
W+ +N R + L+++V P +I AL GT LGI
Sbjct: 42 WVLLNARIWTVILDLSLTVFTIPFVIFPALAGTPLGI 78
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +2
Query: 782 PXXPXPPGXXF-GPIPXPPPXXXGXPPXNGGTH 877
P P PP F P P PPP PP + H
Sbjct: 207 PPPPLPPNSQFMTPPPRPPPAPFSIPPPSVDIH 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,280
Number of Sequences: 27780
Number of extensions: 342035
Number of successful extensions: 1365
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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