Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A15
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   2.0  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    27   2.6  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.6  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   6.0  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   6.0  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 540  LKVRSFFLKSXSYFTFILQFRECGIDKRLRSSYGSFRIIRINQNSFFVGT 391
            LK    FLK+ +Y TF+L  +  G  +RL     S  +  I  ++F V +
Sbjct: 902  LKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNS 951


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 473 HSLNCNINVKYEXDFKKNDLTFNYYIHNTTESYKRK-VVEEIEEMLAKYKLTDAYEEL 643
           H L   +N+K+    + +D+   YY     ++++RK VV   EE+    ++ + +++L
Sbjct: 315 HLLGVYLNLKHVYLLENDDVEDAYYERQWMQAFQRKNVVAVAEELQTALRIIEQWKQL 372


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 101 CLCFDICQTCQQSHVTKHNCKS*EFPIVR 15
           C  FD+C+ C       H C    F +VR
Sbjct: 79  CFDFDVCRDCYAKQAFLHPCPKPHFVLVR 107


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 439 FVSYYSHKPKQFLCRDMFRVRVDSLSPISLDIRPCSLPIKLLFPSTGPALWTISEIF 269
           F+  Y  + K  L      +R+ SLS      R  ++ ++  FPS    LW IS ++
Sbjct: 68  FLQTYGKQEKNLLAYFKASIRIKSLS----HQRKAAVELQKNFPSRKHTLWVISSLY 120


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 565 LGSVMNIIIKGEVIFFKILFILH 497
           LG ++N ++KG +  + +L I+H
Sbjct: 162 LGKIINSMVKGLIYLYNVLHIIH 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,106
Number of Sequences: 5004
Number of extensions: 65700
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)