Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A15
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical pr...    36   0.050
Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop heli...    31   1.1  
U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop heli...    31   1.1  
Z66565-7|CAE17924.1|  287|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical
           protein R13H4.3 protein.
          Length = 376

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = +1

Query: 253 DEYTNKIFPKWSKEPGLLTEKGALLEGYMGEYLTKWVIENQLLPGTCPDKETVLVYANNT 432
           D+YT K    WS+  G LT  G      +GE+     +++  +P     KE V + ++++
Sbjct: 43  DQYTEKA---WSRGWGQLTSIGMQQLHELGEFFRHQYVDSSFIPSNFSVKE-VYLRSSDS 98

Query: 433 KRTIATAKAFVDAAFP 480
            R + +A+AF+   +P
Sbjct: 99  DRALVSAQAFLYGLYP 114


>Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical
           protein C36E8.3 protein.
          Length = 498

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 140 ISFTVRVELKKKTCLCFDICQTCQQSHVTKHNC 42
           +S TV +   + TC+ FD C TC  + +   NC
Sbjct: 308 VSNTVVILKAQPTCISFDTCDTCTNATLPHFNC 340


>U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop helix
           protein 27 protein.
          Length = 321

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +2

Query: 497 VKYEXDFKKNDLTFNYYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDXII 655
           V  E +F  NDL+ +      TES +RKV  E E++  K K  D Y EL   I
Sbjct: 121 VNLESNFSSNDLSESTRRKFDTESERRKVKTEREKIRRK-KQDDCYAELKFFI 172


>U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop helix
           protein 25 protein.
          Length = 313

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +2

Query: 497 VKYEXDFKKNDLTFNYYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDXII 655
           V  E +F  NDL+ +      TES +RKV  E E++  K K  D Y EL   I
Sbjct: 113 VNLESNFSSNDLSESTRRKFDTESERRKVKTEREKIRRK-KQDDCYAELKFFI 164


>Z66565-7|CAE17924.1|  287|Caenorhabditis elegans Hypothetical
           protein T04F8.9 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 528 TSPLIIIFITLPSPTNEKLSKKSRKCSPNI 617
           TSP+  I+I  PSP     ++K R+ SP +
Sbjct: 202 TSPIHRIYIRAPSPVRRHPARKPRRQSPRV 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,063,333
Number of Sequences: 27780
Number of extensions: 376631
Number of successful extensions: 926
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)