Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_A14
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.041
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.13
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.51
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 29 1.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 3.6
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 8.3
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.041
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +2
Query: 677 PPAIXKTPRRXSPXRXPANMGGTXXIPPXAP-KXPPXPTPXPPKQXTGSPXARXXXPXHH 853
PP+ P S R P + IPP +P PP P+ PP + P A+ P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 854 QXXTP 868
P
Sbjct: 184 PPSAP 188
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +2
Query: 677 PPAIXKTPRRXSPXRXPANMGGTXXIPPXAPKXPPXPTPXPPK 805
PP K P S PA PP AP P P PPK
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200
Score = 30.3 bits (65), Expect = 0.39
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = +2
Query: 677 PPAIXKTPRRXSPXRXPANMGGTXXIPPXAPKXPPXPTPXPPKQXTGSPXARXXXPXHHQ 856
PPA P + SP P+ +PP PK PP P P T S + P H
Sbjct: 173 PPAQPAAPVK-SPPSAPSLPSA---VPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGH- 227
Query: 857 XXTPXTQXEPPE 892
P E P+
Sbjct: 228 --APNVTSESPK 237
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 725 PANMGGTXXIPPXAPKXPPXPTPXP 799
PA M +PP AP PP P P P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +2
Query: 677 PPAIXKTPRRXSPXRXPANMGGTXXIPPXAPKXPPXPTPXP 799
PP+ + +P P +PP AP PP P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 680 PAIXKTPRRXSPXRXPANMGGTXXIPPXAPKXP-PXPTPXPPKQXTGSPXARXXXP 844
P + K + P P+ +P AP P P TP PK +G+P A P
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = +2
Query: 677 PPAIXKTPRRXSPXRXPANMGGTXXI--PPXAPKXPPXPTPXPPKQXTGS 820
PP T + P R N+G I PP P PP P + TG+
Sbjct: 247 PPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRSTGT 296
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 380
T+N+ K+ ++ ++++F CL +LN LK+ + + + A +V +Y KS
Sbjct: 40 TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96
Query: 381 LKGCISSVLQ 410
L+ + VL+
Sbjct: 97 LREKFAQVLE 106
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.7
Identities = 24/59 (40%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Frame = +2
Query: 659 KSX*DXPPA-IXKTPRRXS-PXRXPAN-MGGTXXIPPX---APKXPPXPTPXPPKQXTG 817
KS PPA I TP P PA MGG PP A PP P P PP G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/41 (29%), Positives = 15/41 (36%)
Frame = +2
Query: 677 PPAIXKTPRRXSPXRXPANMGGTXXIPPXAPKXPPXPTPXP 799
PP + P +P NM +PP P P P P
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFP 540
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +3
Query: 351 FKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNXTNQLIDFVCYKDGDRXAXSI 530
FK Y D + L + + C+ +EY + + + ++Q + Y++ R A S+
Sbjct: 13 FKFYIDTALLLN---AEFISSFTNCINSEYNGKVKISYSSSSQQFKVIVYEEHKREAFSL 69
Query: 531 AE 536
E
Sbjct: 70 FE 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,146
Number of Sequences: 5004
Number of extensions: 43786
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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