Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A13
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   2.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.5  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    26   6.0  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 496 TTPSRFTXTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMMKAMPPTIIQATGA 317
           TTP   T TITP V  + I T M  A +T M+       +     +  A   T ++ T  
Sbjct: 108 TTPMVETTTITPMVETTTI-TPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTT 166

Query: 316 TLKLVSDSTV 287
           T  +V  +T+
Sbjct: 167 TTPMVETTTI 176


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -3

Query: 440 QHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MN 261
           +   ++R G+KH    P     S   NDES A  N      Y++    Q     SEL +N
Sbjct: 476 ESSEQNRGGNKHLELYPSTAEVSNVRNDESKA--NSLSEISYNQ----QSECRSSELNVN 529

Query: 260 RQSETQQSET 231
             S  Q+ E+
Sbjct: 530 EDSANQKEES 539


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -1

Query: 493 TPSRFTXTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPK-NAMMKAMPPTIIQATGA 317
           TP+          SFS+ +T      VTS  + S++ P     N+    +PPT    T  
Sbjct: 35  TPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTT 94

Query: 316 TL 311
           T+
Sbjct: 95  TV 96


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -3

Query: 542 LVLLEXLVHPVRDXSNYSVEIHXHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEEC 363
           ++LLE L++   +   + +EI  HH      + H H HED     H   + D     EEC
Sbjct: 153 ILLLEVLLNRYVEW-RFGMEIGDHHGPTLGAKQHSHSHEDGAHGVHEHPVYD----IEEC 207

Query: 362 ND 357
            D
Sbjct: 208 AD 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,946
Number of Sequences: 5004
Number of extensions: 42276
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)