Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_A13
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 31 1.6
08_02_0707 - 20212190-20214592 29 3.6
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 29 4.8
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 4.8
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 29 4.8
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 29 6.3
05_01_0214 - 1615519-1616775 29 6.3
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222... 28 8.4
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 28 8.4
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619... 28 8.4
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 479 HXHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESD 348
H HH + H HE+ + A A DG +S+E +DE +
Sbjct: 474 HRHHPQPPPSRPHYQYHENNIAVAAAAAASDGEQSSDEEDDEEE 517
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 479 HXHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGH 324
H H ++ H H HED HA+ + A E + +++ ++H H
Sbjct: 504 HSHSHSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHH 555
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 512 VRDXSNYSVEIHXHHYAQGQFQCHQHQHEDRVG 414
V S+ S+E H +HY G H HQ D VG
Sbjct: 117 VGSSSSDSLEHHSNHYCNGGHHHHGHQCYDSVG 149
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 446 CHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSE 309
C + H+D +K + PDG AAS N+ D ++H G ++E
Sbjct: 1930 CLDYPHDDHNSEKEDIHQPDGYAASPGNNNHFD--SSHEGGYLHAE 1973
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 425 DRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSEA 306
D +HA A P A + +D+ D+P GHRR A
Sbjct: 350 DEFALRHAAAPPPPVALAVSPDDDDDSPARSGGHRRSRSA 389
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 449 QCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRR 318
+C H + GD+H +A D T S CN + N RR
Sbjct: 186 ECLDHYNALHPGDEHDLAPGDVTLCSAPCNSTTWTHGNFVARRR 229
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 479 HXHHYAQGQFQCHQHQHEDRVGDKHAVAL 393
H HH+ + Q H H HED G+ V L
Sbjct: 207 HDHHHHEDQEHGHVHHHEDGHGNSITVNL 235
>05_04_0066 +
17621532-17621619,17621658-17621820,17621864-17622233,
17622548-17623009
Length = 360
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 437 VDGTETDLGRNGVCESRRS--SCXYPELDEQXLPARPRYVPCH 559
++ TE G RRS S Y ARPRYVPC+
Sbjct: 11 MENTEAADGDGATATWRRSVRSSNYSSASSTASSARPRYVPCY 53
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 327 PPALL*SWSLTAQSLCQRIVNEPPIRD 247
PPA+L +S S+C++IV EPP+ D
Sbjct: 400 PPAVLQGFSPEVPSVCEKIV-EPPLAD 425
>01_03_0014 +
11655216-11655287,11657833-11658048,11659848-11661912,
11662966-11663013,11663081-11663328,11663429-11663558,
11663707-11663983,11664102-11664180,11664311-11664397,
11664586-11664618
Length = 1084
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 555 VIEHRFXCCGPXGPGSYLSLTPAHN 629
++ +F CG GP Y++ TP +N
Sbjct: 794 IVTDKFSDCGDNGPSQYIAPTPVNN 818
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,419,709
Number of Sequences: 37544
Number of extensions: 352073
Number of successful extensions: 846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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