Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A13
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    35   8e-04
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   4.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
 Frame = +3

Query: 261 VHLQFADIETVLSETSFRVAPVACMIVXXXXXXXXXXXXXXXXRESNCMLVTYAIFMLVL 440
           +HLQ   +   + ET      +  +++                RES+CM +T+A F+L +
Sbjct: 33  IHLQILGVSKQI-ETGLAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFI 91

Query: 441 MALKLTLGVMVXV------NLDGVVAXIPNWMNKXF--QQDQDTXHVIEHRFXCCGPXGP 596
           + +++ + V   +      N   +        N  F   + +D    I+    CCG    
Sbjct: 92  LLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSL 151

Query: 597 GSY 605
             Y
Sbjct: 152 SDY 154


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 365 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 222
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 365 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 222
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 365 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 222
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 365 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 222
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 299 RDQLQSSAGGLYDCWGHRFHHCILRMLRCHQG 394
           RD  + + GG+Y    H  HH     +  H G
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAILGHSG 294


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 356 HHCILRMLRCHQGEQLHACHL-RDLHAGVD 442
           +HC L    CH G  L    L R LH  ++
Sbjct: 127 NHCELHRAACHSGSSLTKSRLMRCLHHDIE 156


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 371 RMLRCHQGEQLHACHL 418
           R LR H GE+ +AC L
Sbjct: 55  RHLRVHTGERPYACEL 70


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 474 TPLRPRSVSVPSTP 433
           TPL+PR  S+ S+P
Sbjct: 892 TPLQPRFYSISSSP 905


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,303
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)