Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A12
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.70 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 183 SARNKSKSRTMLTL-----LI*LKINYICRNIL*NYQTRRLSSH 67
           SA +K+ S+ MLT      ++   I  +  N+L NY+  +L +H
Sbjct: 13  SAASKTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQLPTH 56


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 606 LHHHQLVQTHADDFQLP*VQRNALSQQP 523
           LHHHQ     A     P  Q+    QQP
Sbjct: 814 LHHHQSTHPQAQAQAQPQQQQQQQQQQP 841


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 288 LRHEADNFNKLKNVCSKEIGL 350
           +RH++D ++KLK    K  G+
Sbjct: 20  IRHQSDRYSKLKRNWRKPKGI 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,050
Number of Sequences: 438
Number of extensions: 4463
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)