Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A11
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   2.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.7  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   8.1  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 207 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 296
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 643 QRRLNGLRIVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLXSTVLTTISSG 491
           Q  L+ L   P+G+ +S++ +L TDF +++ + +   S   S   T +S G
Sbjct: 325 QAELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +1

Query: 298 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 474
           S  NS T  AT +S   L+  +  +  +A S P S V     T  S  T +T+ ++S   
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481

Query: 475 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 600
            SAS  P  S+   S T+  STP T  N   +    +T  S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 429 LIQDEGDGKT-LKLRFDVSQYTPEEIVVKTVDXKL 530
           LI D G GK+ L LRF    +TP  I    +D K+
Sbjct: 14  LIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKI 48


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 656 CLPWKRHCHNSPSRTGTFLSRSTERSHH 739
           CL W RH  +S SR+G         ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,948
Number of Sequences: 5004
Number of extensions: 60707
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)