Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A11
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1498 + 26995209-26995752,26995945-26996513                       32   0.52 
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    31   1.2  
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015           29   3.7  
05_01_0380 + 2978256-2979284                                           29   4.9  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   4.9  
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820...    29   6.5  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    28   8.5  

>07_03_1498 + 26995209-26995752,26995945-26996513
          Length = 370

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +3

Query: 384 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDXKLLVHAKHEEKSD 563
           ++L  P HW  +  P + + G G+    RF  +  TP E      D  + VH+  +  SD
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPMEPNSFGYD-SIKVHSFSDFDSD 303

Query: 564 TKSVYREYNREFLLPKGTILRP 629
           + S+  E    F +  GT + P
Sbjct: 304 SDSIEFE-EHSFTVLTGTDVVP 324


>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
            35382285-35382392,35382695-35383225,35383614-35383743,
            35384225-35385081,35385303-35385408,35387119-35387230,
            35389255-35389347,35389723-35389771,35389859-35389897,
            35390671-35390757,35391613-35391873,35391957-35392166,
            35392413-35393507
          Length = 1501

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 185  EKYPHQA---WRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQRKQQFLQE 343
            EKYP  A    RF G+R R+L   + L     E+G       I  +E+RK +FL+E
Sbjct: 1213 EKYPVMAELIHRFQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEE 1268


>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
          Length = 327

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 447 DGKTLKLRFDVSQYTPEEIVVKTVDXKLLVHAKHEEK 557
           D K +++RFD+   + EE+ V   D  L++  +H+++
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKE 176


>05_01_0380 + 2978256-2979284
          Length = 342

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 642 CPG-RCAYRGSAIATTRHHGQEHSYP 716
           CPG RC + GS +A   H    HS+P
Sbjct: 168 CPGERCGFVGSTVALQDHIAATHSWP 193


>04_03_0018 -
           9434088-9434141,9434211-9434282,9434968-9435062,
           9435445-9435526,9435610-9435660,9435749-9435829,
           9435965-9436006,9436117-9436215,9438130-9438201,
           9438557-9438680,9438850-9439723,9440274-9440456,
           9440941-9442741,9442825-9443049,9443117-9443814,
           9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 490 LPKRSLLRLSTTNYWSTPNTRRNLIRNLCTE 582
           L ++S L LST++ +S  + RRNL+R+  T+
Sbjct: 715 LKRKSFLSLSTSSIFSPLSPRRNLLRSTSTD 745


>07_03_0943 -
           22778877-22780970,22781376-22781480,22781481-22782059,
           22782149-22782187,22782340-22782372
          Length = 949

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 233 ILKHQRALRCRNEEDGRRNEQIQIRTH 313
           + K +R + C+NE  GRRN     R H
Sbjct: 629 VAKRRRLVSCKNERTGRRNTAANKRQH 655


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 9/31 (29%), Positives = 24/31 (77%)
 Frame = +3

Query: 219 VIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 311
           V DTE ++ +E+F+A+++K  +++ ++R ++
Sbjct: 18  VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,449,534
Number of Sequences: 37544
Number of extensions: 381245
Number of successful extensions: 1158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)