Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_A10
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 219 3e-58
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 217 2e-57
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 208 8e-55
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 31 0.29
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.38
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.50
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 1.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 6.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 8.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 219 bits (536), Expect = 3e-58
Identities = 106/197 (53%), Positives = 132/197 (67%)
Frame = +3
Query: 87 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 266
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 267 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 446
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 447 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKAVXRVAYEKKLKRITXDAGEX 626
LKPGR YC VGRLS E+GWKY D+V KLE+ RK K+ Y+ KL + A
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIAS-- 181
Query: 627 VSKATTPFTTIIQSYGY 677
+K +P + +GY
Sbjct: 182 -AKEASPVNQKLSQFGY 197
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 217 bits (530), Expect = 2e-57
Identities = 106/197 (53%), Positives = 132/197 (67%)
Frame = +3
Query: 87 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 266
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 267 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 446
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 447 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKAVXRVAYEKKLKRITXDAGEX 626
LKPGR YC VGRLS E+GWKY D+V KLE+ RK K+ Y+ KL + A
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIAS-- 181
Query: 627 VSKATTPFTTIIQSYGY 677
+KA + + +GY
Sbjct: 182 -AKAASSVNGKLAEFGY 197
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 208 bits (508), Expect = 8e-55
Identities = 92/160 (57%), Positives = 117/160 (73%)
Frame = +3
Query: 87 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 266
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 267 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 446
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 447 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 566
LKP R YC +GRLS E+GWKY+++V KLE+ RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 555 KGKAVXRVAYEKKLKRITXDAGEXVSKATTP 647
KGK V R+ Y+ K + D+GE ++K P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +3
Query: 711 LLVAKNPXPPPXXXPXXXXXXXP-PPPXXXPXXPXXPGXPPFXXGPXXPP 857
LL + P PP P P PPP P P PP G PP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +1
Query: 754 PXXXXXPPPXP----PXXPPXXPAPRGXPPXXXVPXPPQXXXXPSR 879
P PPP P P PP P G P P PP SR
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +3
Query: 714 LVAKNPXPPPXXXPXXXXXXXPPPPXXXPXXPXXPGXPPFXXGPXXPP 857
++ P P P P PPP P G PP P PP
Sbjct: 739 VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPP 782
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +1
Query: 772 PPPXPPXX--PPXXPAPRGXPPXXXV---PXPP 855
PPP PP P PAP PP + P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/41 (29%), Positives = 13/41 (31%)
Frame = +3
Query: 735 PPPXXXPXXXXXXXPPPPXXXPXXPXXPGXPPFXXGPXXPP 857
PPP P PPPP P G + P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -1
Query: 856 GGXKGPXXKGGXPGXXGXXGXXXGGGGXXXXXXXGXXXGGGXG 728
G GP +GG G G G GG G G GG G
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFG 171
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +1
Query: 772 PPPXPPXX-PPXXPAPRGXPPXXXVPXPPQXXXXPS 876
PP P PP AP PP VP PP P+
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPA 1725
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +3
Query: 717 VAKNPXPPPXXXPXXXXXXXPPPPXXXPXXPXXPGXPPFXXGPXXPP 857
V+ P P P PPPP P P PP GP P
Sbjct: 1687 VSTPPVRPQSAAPPQMSAPTPPPPPM--SVPPPPSAPPMPAGPPSAP 1731
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 784 PPXXPPXXPAPRGXPPXXXVPXPP 855
PP PP P P G P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 114 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 218
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = -3
Query: 878 REGXXXXWGGXGTXXKGGXPRGAGXXGGXXGGXGGGXXXXXG 753
R G GG +GG G G GG GG GG G
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 754 PXXXXXPPPXPPXXPPXXPAPRGXPPXXXVPXPPQXXXXP 873
P PP PP P P P G P P PP P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAP--PLPPAAPAPP 477
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +1
Query: 754 PXXXXXPPPXPPXXPPXXP--APRGXPPXXXVPXPPQXXXXP 873
P PP PP PP P P G P P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAP--PLPPSAPIAP 457
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 754 PXXXXXPPPXPPXXPPXXPAPRGXPPXXXVPXP 852
P P P P P PAP G PP VP P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPP---VPKP 1126
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 772 PPPXPPXXPPXXPAPRGXPPXXXVPXP 852
P P P P PAP G PP VP P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPP---VPKP 1164
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 772 PPPXPPXXPPXXPAPRGXPPXXXVPXP 852
P P P P PAP G PP VP P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPP---VPAP 1088
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 197 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 60
D+ A N + L RQ QQM T +YGL+ KAR N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 400 GHPSYVRSLLRAFLPRSVLCGIMP 329
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 856 GGXKG-PXXKGGXPGXXGXXGXXXGGGGXXXXXXXGXXXGGGXGF 725
GG +G P GG PG G G G GG G GG G+
Sbjct: 231 GGFEGGPGGFGGGPG--GFGGGLGGFGGGPGGFGGGPGGHGGPGW 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,162
Number of Sequences: 5004
Number of extensions: 62753
Number of successful extensions: 283
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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