Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A09
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 30/115 (26%), Positives = 32/115 (27%)
 Frame = +1

Query: 328 PXXPPPREKXKGXTXWGGGGXXXKXPPPPXRGFXXXGXXPXXXPPXFFLXAPXKKXFSPP 507
           P  PPPR    G       G     PPPP R     G  P   PP         +  S P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQG-RSAPPPPPPRSAPSTGRQP---PP-----LSSSRAVSNP 388

Query: 508 PNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPPXTP 672
           P      P  P +        G       PP   P    P       P  PP  P
Sbjct: 389 P---APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 328 PXXPPPREKXKGXTXWGGGGXXXKXPPPP 414
           P  PPP  + +G    G G      PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 595 PPQKXPXXFXPPGGGGXXPPXPPXTP 672
           PP   P    PPG  G  PP PP  P
Sbjct: 761 PPPPPP----PPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 403 PPPPXRGFXXXGXXPXXXPPXFFLXAPXKKXFSPPP 510
           PPPP  G    G  P   PP   + A   + ++P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP-AVSAGGSRYYAPAP 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,591
Number of Sequences: 5004
Number of extensions: 33741
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)