Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A09
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    26   0.41 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    26   0.41 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    26   0.41 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    26   0.41 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    26   0.41 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    26   0.41 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.94 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +1

Query: 502 PPPNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPP 663
           P P  +G  P  P        +    F +  PP   P  F PP      PP  P
Sbjct: 130 PVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFP-RFIPPNAYRFRPPLNP 182


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +1

Query: 502 PPPNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPP 663
           P P  +G  P  P        +    F +  PP   P  F PP      PP  P
Sbjct: 120 PVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFP-RFIPPNAYRFHPPLNP 172


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +1

Query: 502 PPPNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPP 663
           P P  +G  P  P        +    F +  PP   P  F PP      PP  P
Sbjct: 125 PVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFP-RFIPPNAYRFHPPLNP 177


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +1

Query: 502 PPPNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPP 663
           P P  +G  P  P        +    F +  PP   P  F PP      PP  P
Sbjct: 125 PVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFP-RFIPPNAYRFHPPLNP 177


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +1

Query: 502 PPPNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPP 663
           P P  +G  P  P        +    F +  PP   P  F PP      PP  P
Sbjct: 125 PVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFP-RFIPPNAYRFHPPLNP 177


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +1

Query: 502 PPPNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPP 663
           P P  +G  P  P        +    F +  PP   P  F PP      PP  P
Sbjct: 355 PVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFP-RFIPPNAYRLRPPLNP 407


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +1

Query: 502 PPPNIFGXXPXXPXKKXFFFXKXGGXFXFFXPPQKXPXXFXPPGGGGXXPPXPP 663
           P P  +G  P  P        +    F +  PP   P  F PP      PP  P
Sbjct: 341 PVPIYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFP-RFIPPNVYRFRPPLNP 393


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 49  VSFVRPVSVAAQPSWITTVISYVGVWNAGVLHVSVMNSP 165
           +S  +P+    Q  ++   +SY+    AGV++  V+ +P
Sbjct: 814 LSSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTP 852


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,354
Number of Sequences: 438
Number of extensions: 5487
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)