Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A04
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    32   0.72 
12_01_0378 - 2946916-2947590                                           28   8.9  

>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
 Frame = +1

Query: 76   LDAPKMKPAIVILCLFVASLYAADSDVPNDILE------EQLYNSV-VVADYDSAVEKSK 234
            LD P  + A ++L  F   L++ DS  P  IL       E   NS   V D   A E S 
Sbjct: 646  LDCPLFRNARIVLDDFEVILHSPDSIAPVGILHPLKFHLEHKPNSFGTVGDSAIAQENSS 705

Query: 235  HLYE----------EKKSEVITNVVNKLIRNNKMNCME------YAYQLWLQRLQGTSSG 366
            +LYE          EKK E ++ V       N   C+       ++   W+Q   GTS G
Sbjct: 706  YLYEVDGAIAHSDVEKKQETLSPVTTVDACTNIDLCISKTGKKLFSIGCWIQDPCGTSEG 765

Query: 367  IVSQLSSDLSSPKTRL 414
            + + L + LS  + +L
Sbjct: 766  LKTDLVAVLSRIENQL 781


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 73  GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 213
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,513,353
Number of Sequences: 37544
Number of extensions: 421199
Number of successful extensions: 1015
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)