Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A04
         (906 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118932-1|AAM50792.1|  344|Drosophila melanogaster LD24340p pro...    29   6.6  
AE014298-2013|AAF48356.2|  344|Drosophila melanogaster CG11674-P...    29   6.6  
AE014298-643|AAF45958.1|  630|Drosophila melanogaster CG3546-PA ...    29   8.8  

>AY118932-1|AAM50792.1|  344|Drosophila melanogaster LD24340p
           protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 543 ERXTSSXLSGWSCPGRRRRQVCHRRLEH-HCS---ASKRDRRAC 424
           ER   + + G +CP      +CH R +  HCS    S  DRR C
Sbjct: 66  ERLKLTNIIGGACPCPMPNAICHTRWQQCHCSEGHVSSDDRRRC 109


>AE014298-2013|AAF48356.2|  344|Drosophila melanogaster CG11674-PA
           protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 543 ERXTSSXLSGWSCPGRRRRQVCHRRLEH-HCS---ASKRDRRAC 424
           ER   + + G +CP      +CH R +  HCS    S  DRR C
Sbjct: 66  ERLKLTNIIGGACPCPMPNAICHTRWQQCHCSEGHVSSDDRRRC 109


>AE014298-643|AAF45958.1|  630|Drosophila melanogaster CG3546-PA
           protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
 Frame = +2

Query: 152 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*--TN*YETTR*TAWSTP 325
           TS +    SS +++SS   ++ + K      +   + SS +S   T   +    ++ S+ 
Sbjct: 414 TSSSNVAASSSSVSSSGSNSSDKKKNKKKKKKPSSSSSSSLSQRRTKKKKKQSSSSSSSS 473

Query: 326 INFGSSGSKGHRPGLFPS*VQTYLRRKRD*AYVQARRSRFDAEQ*CSRRRWQTCLRRRPG 505
            +  SS +K  RP    S +  Y RR+     +Q +R R   +Q   RR+ Q   RRR  
Sbjct: 474 SSIISSSNKRRRPSSSSS-IGGYRRRRPQQQQLQQQRRRKTQQQQKRRRQQQQQKRRRQQ 532

Query: 506 QDQPESXL 529
           Q Q    L
Sbjct: 533 QQQQRRRL 540


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,836,586
Number of Sequences: 53049
Number of extensions: 667986
Number of successful extensions: 2032
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)