Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A04
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   2.0  
U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    30   2.6  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    30   2.6  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   8.0  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   8.0  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 205 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 315
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 205 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 315
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 247 EKKSEVITNVVNKLIRNNKMNCMEY---AYQLWLQRLQGTSSGIVSQLSSDLSSPKTRLS 417
           +K  EV TN++N  I    +N ME+    Y  W+  ++ T    + +L + +      L+
Sbjct: 166 KKHFEVGTNIMNLFIGTLCVNAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLA 225

Query: 418 LCTSATVSL 444
            C +   +L
Sbjct: 226 ACVTFLTNL 234


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 247 EKKSEVITNVVNKLIRNNKMNCMEY---AYQLWLQRLQGTSSGIVSQLSSDLSSPKTRLS 417
           +K  EV TN++N  I    +N ME+    Y  W+  ++ T    + +L + +      L+
Sbjct: 166 KKHFEVGTNIMNLFIGTLCVNAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLA 225

Query: 418 LCTSATVSL 444
            C +   +L
Sbjct: 226 ACVTFLTNL 234


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
 Frame = +1

Query: 85   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 252
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 253  KSEVITNVVNKLIRNNKMNCMEYAYQLWLQRLQGTSSGIVSQLSSDLS 396
            + E   N++N  +      C+E AY      + G  S +   LS  LS
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAYDC----VNGIMSDLEEYLSEWLS 1023


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
 Frame = +1

Query: 85   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 252
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 253  KSEVITNVVNKLIRNNKMNCMEYAYQLWLQRLQGTSSGIVSQLSSDLS 396
            + E   N++N  +      C+E AY      + G  S +   LS  LS
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAYDC----VNGIMSDLEEYLSEWLS 1023


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,017
Number of Sequences: 27780
Number of extensions: 328775
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)