Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A04
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.8  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   5.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   5.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 172 EEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQRLQ 351
           +EQL  S V ++Y    +   +   E ++  +TN+++       M+  +Y   L L +L 
Sbjct: 475 QEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILS-------MDNTQYNLDLSLPQLD 527

Query: 352 GTS-SGIVSQLSSDLSS 399
            T  + +   LS +LSS
Sbjct: 528 STELADLDISLSENLSS 544


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 GVRLSTLAPAAPRDIVRDCFPVEFRLI 395
           G RL +LAP   R     C P E R I
Sbjct: 65  GRRLKSLAPLVLRGACPQCSPEETRQI 91


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 GVRLSTLAPAAPRDIVRDCFPVEFRLI 395
           G RL +LAP   R     C P E R I
Sbjct: 65  GRRLKSLAPLVLRGACPQCSPEETRQI 91


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 246 GEEERSHHKCREQTDTKQQDELHGV 320
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,901
Number of Sequences: 438
Number of extensions: 4331
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)