Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A02
         (1247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.33 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    30   0.77 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 335 PPRXXRPPPXXXPPRXPPPXXMXXLXXPXPPPPXXGXXG 219
           PP    P P   P   PPP  +  +  P PPPP  G  G
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPI--MGGPPPPPPPPGVAG 772



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -1

Query: 317 PPPXXX---PPRXPPPXXMXXLXXPXPPPP 237
           PPP      PP  PPP  +     P PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 314 PPXXXPPRXPPPXXMXXLXXPXPPPP 237
           PP   PP  PPP        P PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 317 PPPXXXPPRXPPPXXMXXLXXPXPPPP 237
           PP    PP  PPP        P PPPP
Sbjct: 5   PPGNPPPP--PPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 311 PXXXPPRXPPPXXMXXLXXPXPPPPXXG 228
           P   PP  PPP        P PPPP  G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQP-PPPPPPG 31


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 229 PXXGGGGXGXXXXYXXXGG-GXRGGXXXGGGRXXRGG 336
           P  GGG  G    +   GG G RGG   G GR  RGG
Sbjct: 443 PRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGR-GRGG 478


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 241 GGGXGXXXXYXXXGGGXRGGXXXGGGRXXRGG 336
           GG  G    +    GG RGG   GG R  RGG
Sbjct: 19  GGFNGGRGGFGGGRGGARGGGR-GGARGGRGG 49



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +1

Query: 238 GGGGXGXXXXYXXXGGGXRGGXXX-GGGRXXRGG 336
           GG G G         GG RGG    GG R  RGG
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.144    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,155
Number of Sequences: 5004
Number of extensions: 16632
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)