Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_A01
         (1404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.041
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.041
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 228 PPPPPRXXVGXXXRXXPXPXXSPXXXVGXLXXPPPPP 118
           PPPPP   +       P P   P   +G    PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 32.3 bits (70), Expect = 0.17
 Identities = 21/72 (29%), Positives = 23/72 (31%)
 Frame = -1

Query: 327 PPPAXXRXXRRXXPAXLPSXPPAXRGXXRPXXXPPPPPRXXVGXXXRXXPXPXXSPXXXV 148
           PPP          PA +P  PPA      P   PPPPP    G      P P  +     
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP---PPPPPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 147 GXLXXPPPPPXP 112
                P P   P
Sbjct: 790 SRYYAPAPQAEP 801



 Score = 29.9 bits (64), Expect = 0.88
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 179 PPPVSPLXXXXAXSXXPPPPPXPXPXGXARGVSPS 75
           PPP  P     A    PPPPP     G +R  +P+
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPA 796



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 1043 PXAARXGGPPXXPPPXXXRPRXPPP 1117
            P A   GGPP  PPP       PPP
Sbjct: 753  PPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/84 (22%), Positives = 21/84 (25%)
 Frame = +2

Query: 1004 PXTTHXPSDRRGXPXAARXGGPPXXPPPXXXRPRXPPPXARXHPHXTXQXRPAXPRPXXE 1183
            P   H P +    P      G    PPP    P    P    H H   +  P  P     
Sbjct: 210  PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMHHEP 268

Query: 1184 XXXARPTTPXXXPXXHXATPXPXH 1255
                 P      P  H   P   H
Sbjct: 269  GEHMPPPPMHHEPGEHMPPPPMHH 292



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 19/84 (22%), Positives = 21/84 (25%)
 Frame = +2

Query: 1004 PXTTHXPSDRRGXPXAARXGGPPXXPPPXXXRPRXPPPXARXHPHXTXQXRPAXPRPXXE 1183
            P   H P +    P      G    PPP    P    P    H H   +  P  P     
Sbjct: 262  PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMHHEP 320

Query: 1184 XXXARPTTPXXXPXXHXATPXPXH 1255
                 P      P  H   P   H
Sbjct: 321  GEHMPPPPMHHEPGEHMPPPPFKH 344


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 288 PAXLPSXPPAXRGXXRPXXXPPPPP 214
           P   P  PP   G   P   PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 191 PXXXPPPVSPLXXXXAXSXXPPPPP 117
           P   PPP  P       S  PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = +2

Query: 1037 GXPXAARXGGPPXXPPPXXXRPRXPPPXARXHPHXTXQXRPAXPRP 1174
            G P      G P  P P    P  P P     P       P  P+P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/50 (30%), Positives = 17/50 (34%)
 Frame = +2

Query: 1022 PSDRRGXPXAARXGGPPXXPPPXXXRPRXPPPXARXHPHXTXQXRPAXPR 1171
            PS R      A     P  PPP   R R  PP      + +    P  PR
Sbjct: 295  PSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.137    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,713
Number of Sequences: 5004
Number of extensions: 24227
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 778973776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)