Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P22
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   153   4e-38
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   149   7e-37
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    70   4e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    47   3e-06
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    28   1.6  
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    28   2.1  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    27   3.7  
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    27   3.7  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    27   4.8  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   8.5  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   8.5  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  153 bits (370), Expect = 4e-38
 Identities = 96/237 (40%), Positives = 128/237 (54%), Gaps = 8/237 (3%)
 Frame = +3

Query: 180 LGQAGVQIGNA-WLGALLPGARHPA*WPDAH-RTRTIGGWRTNSFKHFLQREPELASTYP 353
           +GQAGVQIGNA W    L     P  +P  +        +  + F  F   E       P
Sbjct: 9   VGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFS-ETGQGKFVP 67

Query: 354 XGCXXXXXXXXXXXXXXXXHTDQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 533
                              + D LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RI
Sbjct: 68  RSIYVDLEPNVIDQVRTGPYKD-LFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126

Query: 534 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAAS-GFHCR 710
           R++AD C+GLQGFL+FH            LL+ERL+++YGKKS L+F++YPA        
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVV 186

Query: 711 RRALQLYPHHPHNP*ATLTVLSWVENEAIYXICRRNLEIXPP---NLNQ--PEIVSS 866
                +   H     +  T +  V+NEA Y ICRRNL+I  P   NLN+   ++VSS
Sbjct: 187 EPYNSVLTTHATLDNSDCTFM--VDNEACYDICRRNLDIERPTYENLNRLIAQVVSS 241



 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +1

Query: 217 WELYCLEHGIQPDGQMPTEQEPSGXGERILSN---TFFSENRSWQARTPXAVFV 369
           WELYCLEHGI PDG  PTE          L++   TFFSE    +   P +++V
Sbjct: 21  WELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKF-VPRSIYV 72



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 296 NEFFQTLSSARTGAGKHVPRWLSSFDLEPTVVDEVRTGTYR 418
           N+ F T  S  TG GK VPR +   DLEP V+D+VRTG Y+
Sbjct: 50  NDGFGTFFS-ETGQGKFVPRSIY-VDLEPNVIDQVRTGPYK 88


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  149 bits (360), Expect = 7e-37
 Identities = 99/238 (41%), Positives = 128/238 (53%), Gaps = 9/238 (3%)
 Frame = +3

Query: 180 LGQAGVQIGNA-WLGALLPGARHPA*W--PDAHRTRTIGGWRTNSFKHFLQREPELASTY 350
           +GQAG QIGNA W    L     P  +  P+     + GG+ T     F   E       
Sbjct: 9   VGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFST-----FFS-ETGQGKYV 62

Query: 351 PXGCXXXXXXXXXXXXXXXXHTDQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 530
           P                   + D LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+
Sbjct: 63  PRSIYVDLEPNVIDQVRTGPYRD-LFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDK 121

Query: 531 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAAS-GFHC 707
           IR++AD C+GLQGFL+FH            LL+ERL+++Y KKSKL+F++YPA       
Sbjct: 122 IRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSV 181

Query: 708 RRRALQLYPHHPHNP*ATLTVLSWVENEAIYXICRRNLEIXPP---NLNQ--PEIVSS 866
                 +   H     A  T +  V+NE+ Y ICRRNL+I  P   NLN+   ++VSS
Sbjct: 182 VEPYNSVLTTHATLDLADCTFM--VDNESCYDICRRNLDIERPSYENLNRLIAQVVSS 237



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 28/51 (54%)
 Frame = +1

Query: 217 WELYCLEHGIQPDGQMPTEQEPSGXGERILSNTFFSENRSWQARTPXAVFV 369
           WELYCLEHGIQP+G M  E            +TFFSE    +   P +++V
Sbjct: 21  WELYCLEHGIQPNGYMNPETASQNSDGGF--STFFSETGQGK-YVPRSIYV 68



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +2

Query: 305 FQTLSSARTGAGKHVPRWLSSFDLEPTVVDEVRTGTYR 418
           F T  S  TG GK+VPR +   DLEP V+D+VRTG YR
Sbjct: 49  FSTFFS-ETGQGKYVPRSIY-VDLEPNVIDQVRTGPYR 84


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 32/89 (35%), Positives = 49/89 (55%)
 Frame = +3

Query: 423 LFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXX 602
           LF P+ +I G+  A N +A+GHYT G E+ D VLD +R+ A+ C  LQGF + H      
Sbjct: 84  LFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGT 143

Query: 603 XXXXXXLLMERLSVDYGKKSKLEFAIYPA 689
                 LL+ ++  +Y  +    F++ PA
Sbjct: 144 GSGMGTLLLSKIREEYPDRMMATFSVAPA 172


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +3

Query: 423 LFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXX 596
           L++PE ++  K    A NN+A G Y+  + I + ++D I + AD    L+GF + H    
Sbjct: 85  LYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAG 143

Query: 597 XXXXXXXXLLMERLSVDYGKKSKLEFAIYP 686
                    L+ERL+  Y KK    ++++P
Sbjct: 144 GTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 217 WELYCLEHGIQPDGQM 264
           W+  CLEHGI PDG +
Sbjct: 22  WQQLCLEHGIGPDGTL 37


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 255 WPDAHRTRTIGGWRTNSFKHFLQ 323
           WP    +  +GGWR   FKHF++
Sbjct: 211 WP-FQLSSPLGGWRDRKFKHFIE 232


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 255 WPDAHRTRTIGGWRTNSFKHFLQ 323
           WP    +  +GGWR   FKHF++
Sbjct: 210 WP-FKLSSPLGGWRERKFKHFIE 231


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 879 RQFFPMRRFQVGLGWAXQFRDYGGRXHRW 793
           +Q  P RRF  G+G   Q +++G    RW
Sbjct: 55  KQAVPFRRFNGGVGRTAQGKEFGVTQARW 83


>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 879 RQFFPMRRFQVGLGWAXQFRDYGGRXHRW 793
           +Q  P RRF  G+G   Q +++G    RW
Sbjct: 55  KQAVPFRRFNGGVGRTAQGKEFGVTQARW 83


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 193 PAWPNVYRECNFNAFLILSFLSMLKWRIK*ESRRRFSATGE 71
           P W ++ RE  +NA L+    S  KW ++   R RF A  E
Sbjct: 221 PQWKDIIRETVYNALLVTDCRSDGKWFLQ-YRRLRFVAHKE 260


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 108 LILHLSIDKKLKIKNALKLHSLYTLGQAGVQIGNAWLGALLPGARHP 248
           LI+HL +D   KI        LY++ Q G  +G+A L +L     HP
Sbjct: 389 LIVHLVLDAVHKIP-VQPYFVLYSIMQFGFSVGSAPLVSLATKQLHP 434


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 361 QPXGYVLASSGSR*RKCLKEFVLXPPM 281
           +P   + +S  S+ RKC K+FV  PP+
Sbjct: 414 RPPPSIASSPESKRRKCPKKFVARPPV 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,702,016
Number of Sequences: 5004
Number of extensions: 76387
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)