Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_P21
(1037 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 37 0.005
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.81
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 29 0.81
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 5.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.6
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 36.7 bits (81), Expect = 0.005
Identities = 22/58 (37%), Positives = 22/58 (37%)
Frame = -2
Query: 907 GGVRGXXGXXGXGG*GXFGCGGGXXGXVXXXLGGXXGGEXSXVXXGGXXXGGVGGRGG 734
GG G G G G G GGG G GG GG G G GGRGG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 31.9 bits (69), Expect = 0.15
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = -2
Query: 871 GG*GXFGCGGGXXGXVXXXLGGXXGGEXSXVXXG-GXXXGGVGGRGGXX*AAXXSXRGKG 695
G G G G G GG GG G G GG GGRGG S G+G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Query: 694 XGXG 683
G
Sbjct: 66 GAKG 69
Score = 29.9 bits (64), Expect = 0.62
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = -2
Query: 907 GGVRGXXGXXGXGG*GXFGCGGGXXGXVXXXLGGXXGGEXSXVXXGGXXXGGVGGRGG 734
GG G G G G G G GG G GG G GG G G +GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR---GGSSGGRGGAKGG 70
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.81
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = -2
Query: 907 GGVRGXXGXXGXGG*GXFGCGGGXXGXVXXXLGGXXGG 794
GG G G G GG G FG G G G GG GG
Sbjct: 231 GGFEGGPGGFG-GGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 29.1 bits (62), Expect = 1.1
Identities = 25/79 (31%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = -2
Query: 871 GG*GXFGCGGGXXGXVXXXLG--GXXGGEXSXVXXGGXXXGGVGGRGGXX*AAXXSXRGK 698
GG G FG G G G G GGE G GG GG G G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 697 GXGXGXXXNXXGVXIGXXG 641
G G G G G G
Sbjct: 248 GGGLGGFGGGPGGFGGGPG 266
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 29.5 bits (63), Expect = 0.81
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 932 PVXXPPXPRXXPXRATKLTHYPLHXPPNSTLPSQQ 1036
P+ PP P P T +PL PP S PS Q
Sbjct: 578 PLSLPPEPLLSPTIDYSATPFPLEPPPESPGPSLQ 612
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 1.1
Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = -2
Query: 886 GXXGXGG*GXF--GCGGGXXGXVXXXLGGXXGGEXSXVXXGGXXXGGVGG-RGG 734
G G GG G F G GG G GG GG GG G GG RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG-FGGGSRGGSRGGFRGG 185
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +2
Query: 827 PXSXPPPATEXSLTXXPPPPXXTPXSSXQQLSPXXPVXXPPXP 955
P S PP + S PPPP P P P PP P
Sbjct: 1694 PQSAAPP--QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 3.3
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +2
Query: 743 APXSPXSRXXXX-HXAXLPTXXXPQTXXHPXSXPPPATEXSLTXXPP--PPXXTPXSS 907
AP P S A P P P S PPP + + PP PP P SS
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.3
Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = +2
Query: 809 PQTXXHPXSXPPPATEXSLTXXPPPPXXTPXSSXQQLSPXXPVXXPP----XPRXXPXRA 976
P T P PP + S P P S P PV PP P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 977 TKLTHYPLHXPPNSTLPSQ 1033
K+ PL P + S+
Sbjct: 199 PKVPPPPLSQAPVANTSSR 217
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +2
Query: 878 PPPXXTPXSSXQQLSPXXPVXXPPXPRXXPXRATKLTHYPLHXPP-NSTLP 1027
PP P + +L P P PP P P P PP S+LP
Sbjct: 124 PPSAPAPPTPQSELRP--PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 5.7
Identities = 17/63 (26%), Positives = 21/63 (33%)
Frame = +2
Query: 842 PPATEXSLTXXPPPPXXTPXSSXQQLSPXXPVXXPPXPRXXPXRATKLTHYPLHXPPNST 1021
PP + PP P S LSP PP P + P P ++
Sbjct: 1023 PPTASQRASAYEPPTVSVP--SPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTA 1080
Query: 1022 LPS 1030
LPS
Sbjct: 1081 LPS 1083
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.7
Identities = 20/80 (25%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Frame = +2
Query: 734 PXPAPXSPXSRXXXXHXAXLPTXXXPQTXXHPXSXP--PPATEXSLTXXPPPPXXTPXSS 907
P P P S S P P + + P ++ SL PPPP S
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350
Query: 908 XQQLSPXXPVXXPPXPRXXP 967
PP PR P
Sbjct: 351 IPLPPQGRSAPPPPPPRSAP 370
Score = 26.2 bits (55), Expect = 7.6
Identities = 22/98 (22%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Frame = +2
Query: 734 PXPAPXSPXSRXXXXHXAXLPTXXXPQTXXHPXSXPPPATEXSLTXXPP-PPXXTPXSSX 910
P P + S P P++ PPP + PP PP P S
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 911 QQLSP---XXPVXXPPXPRXXPXRATKLTHYPLHXPPN 1015
L P PP P + P PP+
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 7.6
Identities = 25/85 (29%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Frame = +2
Query: 809 PQTXXHPXSXPPPATEXSLTXXPPPPXXTPXSSXQQ----------LSPXXPVXXPPXPR 958
P P S PAT PPPP P + Q S V P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPT 226
Query: 959 XXPXRATKLTHYPLHXPPNSTLPSQ 1033
P +A L P PP TLP Q
Sbjct: 227 YTPKQADPLPAPP--PPPPPTLPPQ 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,786
Number of Sequences: 5004
Number of extensions: 18347
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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