Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_P19
         (1028 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.081
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   0.11 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   2.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   3.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   5.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect(2) = 0.081
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 672 PPPPPPPP 649
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 24.6 bits (51), Expect(2) = 0.081
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 669 PPPPPPPXXXK 637
           PPPPPPP   K
Sbjct: 24  PPPPPPPGYVK 34



 Score = 23.8 bits (49), Expect(2) = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 672 PPPPPPP 652
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 2.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 684 GXXXPPPPPP 655
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect(2) = 0.11
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 684 GXXXPPPPPPPP 649
           G   PPPPPPPP
Sbjct: 772 GAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 696 GXGGGXXXPPPPPPP 652
           G  G    PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 672 PPPPPPPP 649
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 23.0 bits (47), Expect(2) = 0.11
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 666 PPPPPPXXXKXXXGG 622
           PPPPPP       GG
Sbjct: 775 PPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 830 GGGGXGPPPXPXKKXXFFXXXXXXXXXXGGGGXGG 726
           GGG  GPPP P     F           G GG GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 650 GGGGGGGGXXXPPPXPXFF 706
           G GG GGG   PPP P  F
Sbjct: 189 GFGGFGGGSGGPPPGPGGF 207


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
 Frame = -3

Query: 672 PPPPPPPP--XXXKXXXGGGGGXXXFXXKKKKKRKXXXXXXGXXPPPPXXXXPPPP 511
           PPPPPPP      K   G G             R       G  P PP     PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS---NAAGSIPLPPQGRSAPPP 363



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
 Frame = +2

Query: 599 KKXXXPPPPPXXXXXXXG--GGGGGGGXXXPPPXP 697
           KK   PPPPP          G G       PPP P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 708 KKKXGXGGGXXXPPPPPPPP 649
           K   G G      PPPPPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPP 343


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 684 GXXXPPPPPPPP 649
           G   PPPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 696 GXGGGXXXPPPPPPPP 649
           G       PPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPP 313



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 687 GGXXXPPPPPPP 652
           GG   PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/54 (24%), Positives = 16/54 (29%)
 Frame = -3

Query: 672 PPPPPPPPXXXKXXXGGGGGXXXFXXKKKKKRKXXXXXXGXXPPPPXXXXPPPP 511
           PPPPPPPP   +           +    +                P    PPPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPP 242


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect(2) = 3.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 546  PPPPXXXXPPPP 511
            PPPP    PPPP
Sbjct: 1707 PPPPPMSVPPPP 1718



 Score = 20.6 bits (41), Expect(2) = 3.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 669  PPPPPPP 649
            P PPPPP
Sbjct: 1705 PTPPPPP 1711


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 672  PPPPPPPP 649
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 672 PPPPPPPP 649
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 672 PPPPPPPP 649
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 672 PPPPPPPP 649
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,669
Number of Sequences: 5004
Number of extensions: 29031
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)