Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_P18
(936 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 109 4e-24
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 103 2e-22
02_02_0470 - 10700092-10700505 30 3.0
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 4.0
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 29 5.3
10_08_0951 - 21769342-21769752 29 7.0
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 28 9.3
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 109 bits (261), Expect = 4e-24
Identities = 76/181 (41%), Positives = 101/181 (55%), Gaps = 4/181 (2%)
Frame = +2
Query: 368 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 541
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 542 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDI 721
GPF N P+RR+ Q YVI TST++ + + K F+D YF EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185
Query: 722 FATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARXEKKVLRGYLKXXFGLRSSQYXHRLG 895
F T+KE K +P E +K DQK VD +IKAI A + L+ YL F LR H +
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLRDGDKPHEMV 241
Query: 896 F 898
F
Sbjct: 242 F 242
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 103 bits (248), Expect = 2e-22
Identities = 73/171 (42%), Positives = 96/171 (56%), Gaps = 7/171 (4%)
Frame = +2
Query: 317 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 481
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 482 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDY 661
+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146
Query: 662 FXXXXXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAI 808
F EG ++F T+KE K +P + +K DQK VD +IKAI
Sbjct: 147 F---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAI 192
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 443 LKIGTVCILLAGRHAGKRVVLVGILPSG 526
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 576 AFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 701
AFL+ + PP + H C N S++I R + N QSN
Sbjct: 544 AFLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 29.1 bits (62), Expect = 5.3
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +3
Query: 627 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP---QKKRNTFHLSSAKPIRRQSTRL* 797
T + +S RR RS S +S ++ ++ P K R+ S P+RR +R
Sbjct: 522 TRSISRSSARSLQRRSRSRSLERSPVRKSVSRSPPTMDKGRSISRTSGRLPLRRSISRSP 581
Query: 798 SKPSEPXPKRRCSADTSRXXSDS 866
+P P R +T R S S
Sbjct: 582 DRPYRRIPSRSPRKNTRRSISRS 604
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 443 LKIGTVCILLAGRHAGKRVVLVGILPSG 526
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 119 QLAGAVPQKKSXXKPRXSALGNGVMRFSKSKXVPQXG 229
++A A P K + KPR SA G G R + S +P G
Sbjct: 4 KVANATP-KAAAGKPRLSAAGGGAYRRTSSGPLPSAG 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,169,143
Number of Sequences: 37544
Number of extensions: 590614
Number of successful extensions: 1577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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